View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12929_low_65 (Length: 225)
Name: NF12929_low_65
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_65 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 9305345 - 9305489
Alignment:
| Q |
60 |
aatcaagatctgctccatataggatccctctatttacttaacaattttaacaaattccaaaactctcaaatcataactaaacaaaacaactttcgattaa |
159 |
Q |
| |
|
||||||||| |||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
9305345 |
aatcaagatatgctgcatataggctccctccatttacttaacgattttaacaaattccaaaactctcaaatcataactaaacaaaataactttcaattaa |
9305444 |
T |
|
| Q |
160 |
aattacctcagaaacccaacattgccaaacaacacctctactatc |
204 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
9305445 |
aattacctcagaaacccaacactgccaaacaactcctctactatc |
9305489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University