View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12929_low_66 (Length: 224)
Name: NF12929_low_66
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_66 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 5076353 - 5076545
Alignment:
| Q |
18 |
ataattacatgacttataatttggaattatgagcaaaaatgttcaaatgtttacacttaagatgtggaaacatcatctttatggaaaaagattcgaagtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5076353 |
ataattacatgacttataatttggaattatgagcaaaaatgttcaaatgtttacacttaagatgtggaaacatcatctttatggaaaaagattcgaagtg |
5076452 |
T |
|
| Q |
118 |
tttagtgttcataagaatttctaaaagatttgaacataagaatgcaatgtgagttagtttgaccatgaaaactaaccacaacactagaataat |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5076453 |
tttagtgttcgtaagaatttctaaaagatttgaatataagaatgcaatgtgagtaagtttgaccatgaaagctaaccacaacactagaataat |
5076545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University