View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_9 (Length: 584)
Name: NF12929_low_9
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 42235544 - 42235854
Alignment:
| Q |
18 |
cataattgatgcaatcttcagttagtctttagggcacacaaagaaagagtcccactcatccagttacacagtgtagccacgtgcaatgagtctttgcttc |
117 |
Q |
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||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42235544 |
cataattgatgca-tcttcagttggtcttcagggcacacaaagaaagagtcccactcatccagttacacagtgtagccacgtgcaatgagtctttgcttc |
42235642 |
T |
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| Q |
118 |
accatactactcacgtggcaccttttcataaccaaatgctgtaaatcattcacctactactactactttttaccatagaagaaaaaagaaaactcattct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42235643 |
accatactactcacgtggcaccttttcataaccaaatgctgtaaatcattcac---ctactactactttttaccatagaagaaaaaagaaaactcattct |
42235739 |
T |
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| Q |
218 |
tcaatttccactct------------cacaacaaatttactaccacagtaccactccattccaatttccattcctcaaaacaaaacaaatctcactcact |
305 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42235740 |
tcaatttccactctcacaagccacaacacaacaaatttactaccacagtaccactccattccaatttccattcctcaaaacaaaacaaatctcactcact |
42235839 |
T |
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| Q |
306 |
ctcccttttcacttc |
320 |
Q |
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||||||||||||||| |
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| T |
42235840 |
ctcccttttcacttc |
42235854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 434 - 560
Target Start/End: Original strand, 42235954 - 42236080
Alignment:
| Q |
434 |
aattcattaattcactcaccaaatctcatgccaaatctaaacaatgtctgatccttcgacttccaccaccccattaccacatccatcaatcctaaccgac |
533 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42235954 |
aattcattaattcactcaccaaatctcatgccaaatctaaacaatgtctgatccttccacttccaccaccccattaccacatccatcaatcctaaccgac |
42236053 |
T |
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| Q |
534 |
caacacaatctaccacttatccacagc |
560 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42236054 |
caacacaatctaccacttatccacagc |
42236080 |
T |
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