View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1292_high_10 (Length: 420)
Name: NF1292_high_10
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 30 - 415
Target Start/End: Original strand, 3918322 - 3918707
Alignment:
| Q |
30 |
aaattatgcttgggtgcttccttgattcttgttttgaatgagcaggtgaagccacactagaactttgttcagaaggtggccggctaacacactgttcaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3918322 |
aaattatgcttgggtgcttccttgattcttgttttgaatgagcaggtgaagccacactagaactttgttcagaaggtggccggctaacacactgttcaaa |
3918421 |
T |
|
| Q |
130 |
aatattcctgtacatagcaagaacatgctgttcgcggcttgtaacctcttcttcaagcaattcaatttcagtaatcaagtcttttgtctaaaaaagggaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3918422 |
aatattcctgtacatagcaagaacatgctgttcgcggcttgtaacctcttcttcaagcaactcaatttcagtaatcaagtcttttgtctaaaaaagggaa |
3918521 |
T |
|
| Q |
230 |
aaattagaaataattaatttcacacaacatgaacttataggaaccatagctttcatgaaaatattatgttgtgcaatggcatccccttgccaatcagtat |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3918522 |
aaattagaaataattaatttcacacaacatgaacttataggaaccatagctttcatgaaaatattatgttgtgcaatggcatccccttgccaatcagtat |
3918621 |
T |
|
| Q |
330 |
ttaaaatttcaggaacgagtctctttatgattatcggctatcatcaaactaccattctttacattagaattagctcctttgcttct |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3918622 |
ttaaaatttcaggaacgagtctctttatgattatcggctatcatcaaactaccattctttacattagaattagctcctttggttct |
3918707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University