View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292_high_11 (Length: 408)
Name: NF1292_high_11
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 52797128 - 52796727
Alignment:
| Q |
1 |
acttgaaattcgaatcttatcttataaaatacaaattcaaaaagagaactgatgtgaaaaattggcctgcatatatattttctataccaaatatgaagtt |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
52797128 |
acttgaaattcgaatcttatcttataaaagacaaattcaaaaagagaactgatgtgaaaaattagcctgcatatatcttttctataccaaatatgaagtt |
52797029 |
T |
|
| Q |
101 |
gactacttacaaagacaacaacgttaatagttcttgaagtaaaactgtagggcccgctgacaccatccccacgaaactgcaagagcacatccaagaagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52797028 |
gactacttacaaagacaacaacgttaatagttcttgaagtaaaactgtagggcccgctgacaccatccccacgaaactgcaagagcacatccaagaagtc |
52796929 |
T |
|
| Q |
201 |
tttactgtttccatttccaacagtatcattttccatcctttgtttgatgaaccatcctgctatctcaaaagctctctcaacatggaactgtgtgtttctc |
300 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52796928 |
tttactgtttccatttccaacaatatcattttccatcctttgtttgatgaaccatcctgctatctcaaaagctctctcaacatggaactgtgtgtttctc |
52796829 |
T |
|
| Q |
301 |
cttataccttgagggtcaagccacttcaatatggggaagaaatccgcaacgttgggtttcccagcatatttcataaccttaatcgcatgatagtataatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
52796828 |
cttataccttgagggtcaagccacttcaatatggggaagaaatccgcaacgttgggtttcccagcatatttcataaccttaatcgcatgataatagaatc |
52796729 |
T |
|
| Q |
401 |
ta |
402 |
Q |
| |
|
|| |
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|
| T |
52796728 |
ta |
52796727 |
T |
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