View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1292_high_27 (Length: 219)

Name: NF1292_high_27
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1292_high_27
NF1292_high_27
[»] chr7 (2 HSPs)
chr7 (9-103)||(27984344-27984442)
chr7 (139-196)||(27984509-27984566)
[»] chr6 (1 HSPs)
chr6 (25-101)||(99034-99109)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 27984344 - 27984442
Alignment:
Q  9 agcaaaggaattagtataatcaatgaataaagtagtcttaagcaactataac----aacaaacttatatctaagtgtgaagcaataccacaaacatatt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    |||||||||||||||||||||||||||||| ||||||||||||    
T  27984344 agcaaaggaattagtataatcaatgaataaagtagtcttaagcaacgataacaacaaacaaacttatatctaagtgtgaagcaataacacaaacatatt 27984442  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 27984509 - 27984566
Alignment:
Q  139 ctacacaccgttactgtttatccagttcggtccaataagacatactctctggagaaag 196  Q
    ||||||| || || |||||||||||||| |||||||||||||||||||  ||||||||    
T  27984509 ctacacatcgatattgtttatccagttcagtccaataagacatactctggggagaaag 27984566  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 99034 - 99109
Alignment:
Q  25 taatcaatgaataaagtagtcttaagcaactataacaacaaacttatatctaagtgtgaagcaataccacaaacata 101  Q
    ||||||||||  |||||||||||||||||| | || ||||||| |||||| |||||| ||| || ||| ||||||||    
T  99034 taatcaatgagcaaagtagtcttaagcaacaacaa-aacaaacatatatccaagtgtaaagaaacaccgcaaacata 99109  T

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