View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1292_high_3 (Length: 612)
Name: NF1292_high_3
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_high_3 |
 | |
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| [»] chr4 (11 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 515; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 30 - 612
Target Start/End: Original strand, 11136627 - 11137209
Alignment:
| Q |
30 |
ttttcgttgtctcgaaaattgctgacaatgatggaatggagtggttttctatcatcactacccctaagtgagtttttcttaccttttaaccttattttga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
11136627 |
ttttcgttgtctcgaaaattgctgacaatgatggaatggagtggttttctatcatcactacccctaagtgagtttttcttaccttgtaaccttattttga |
11136726 |
T |
|
| Q |
130 |
ttatgcttataagttgtttcttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgcta |
229 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11136727 |
ttatgcttataagttctttcttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaggcgcta |
11136826 |
T |
|
| Q |
230 |
tcacctacagttctacaagctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11136827 |
tcacctacagttctacaagctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaa |
11136926 |
T |
|
| Q |
330 |
attaaagtagaatggaattaagnnnnnnnnnnnnatggcaatgaaaataagttttaacaagccattatagacaatagtttttatctagtttataaagttt |
429 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
11136927 |
attgaagtagaatggaattaagtttttattttttatggcaatgaaaatatgttttaacaagccgttatagacaatagtttttatctagtttataaagttt |
11137026 |
T |
|
| Q |
430 |
ctgcacttttattttggatttataaggagttgattgcctcaaatgatttcttcgggttgacctctattttgatctttctttatattgctgccttagatat |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11137027 |
ctgcacttttattttggatttataaggagttgattgcctcaaatgattttttcgggttgacctctattttgatctttctttatattgctgccttatatat |
11137126 |
T |
|
| Q |
530 |
agttatttttctgtctataagatgcaatttttgcataatgaatactaatatagaaagaagacagtagacagctgaaaaaactt |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11137127 |
agttatttttctgtctataagatgcaatttttgcataatgaatactaatatagaaagaagacagtagacagctgaaaaaactt |
11137209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 148 - 612
Target Start/End: Complemental strand, 23258258 - 23257782
Alignment:
| Q |
148 |
tcttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgctatcacctacagttctacaa |
247 |
Q |
| |
|
||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| || |
|
|
| T |
23258258 |
tcttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactatcacctacagttctgcag |
23258160 |
T |
|
| Q |
248 |
gctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattaaagtagaatggaat |
347 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23258159 |
gctgctttcaatgttgatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaaa |
23258060 |
T |
|
| Q |
348 |
taag----nnnnnnnnnnnnatggcaatgaaaataagttttaacaagccattatagacaatagtttttatctagtttataaagtttctgcacttttattt |
443 |
Q |
| |
|
|||| |||||| || ||||||| || || ||| | ||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
23258059 |
taagttttagttcttcttttatggcattggaaataagcttcaataagtcgttatagacagtagtttttatctactttataaagtttctgcacttttattt |
23257960 |
T |
|
| Q |
444 |
tggatttataaggagttgattgcctcaaatgatttcttcgggttgacctctattttgatct-------ttctttatattgctgcctta---gatatagtt |
533 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||||| || ||| |||||||||||||||||| | |||| |||| || |||| |||||||| |
|
|
| T |
23257959 |
tggatttatgaggagttgattgcttcaattgattt-ttggggatgacctctattttgatctgtgtttaatatttagattgttgtcttatagtatatagtt |
23257861 |
T |
|
| Q |
534 |
atttttctgtctataagatgcaatttttgcataatgaatactaatatagaaagaagacagtagacagctgaaaaaactt |
612 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||| ||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
23257860 |
atttttctttctataagatacaatttttgcataatgaatactgataaagaatgaagacaatagacagctgaaaaaactt |
23257782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 148 - 612
Target Start/End: Complemental strand, 23276136 - 23275660
Alignment:
| Q |
148 |
tcttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgctatcacctacagttctacaa |
247 |
Q |
| |
|
||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| || |
|
|
| T |
23276136 |
tcttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactatcacctacagttctgcag |
23276038 |
T |
|
| Q |
248 |
gctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattaaagtagaatggaat |
347 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23276037 |
gctgctttcaatgttgatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaaa |
23275938 |
T |
|
| Q |
348 |
taag----nnnnnnnnnnnnatggcaatgaaaataagttttaacaagccattatagacaatagtttttatctagtttataaagtttctgcacttttattt |
443 |
Q |
| |
|
|||| |||||| || ||||||| || || ||| | ||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23275937 |
taagttttagttcttcttttatggcattggaaataagcttcaataagtcgttatagacagtagtttttatctactttataaagtttctgcacttttattt |
23275838 |
T |
|
| Q |
444 |
tggatttataaggagttgattgcctcaaatgatttcttcgggttgacctctattttgatct-------ttctttatattgctgcctta---gatatagtt |
533 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||||| || ||| |||||||||||||||||| | |||| |||| || |||| |||||||| |
|
|
| T |
23275837 |
tggatttatgaggagttgattgcttcaattgattt-ttggggatgacctctattttgatctgtgtttaatatttagattgttgtcttatagtatatagtt |
23275739 |
T |
|
| Q |
534 |
atttttctgtctataagatgcaatttttgcataatgaatactaatatagaaagaagacagtagacagctgaaaaaactt |
612 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||| ||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
23275738 |
atttttctttctataagatacaatttttgcataatgaatactgataaagaatgaagacaatagacagctgaaaaaactt |
23275660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 149 - 351
Target Start/End: Complemental strand, 27542896 - 27542695
Alignment:
| Q |
149 |
cttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgctatcacctacagttctacaag |
248 |
Q |
| |
|
|||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||| || | |
|
|
| T |
27542896 |
cttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcgctatcgcctacggttctgcagg |
27542798 |
T |
|
| Q |
249 |
ctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattaaagtagaatggaatt |
348 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27542797 |
ctgctttcaatgtagatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaaat |
27542698 |
T |
|
| Q |
349 |
aag |
351 |
Q |
| |
|
||| |
|
|
| T |
27542697 |
aag |
27542695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 27543044 - 27542963
Alignment:
| Q |
32 |
ttcgttgtctcgaaaattgctgacaatgatggaatggagtggttttctatcatcactacccctaagtgagtttttcttacct |
113 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27543044 |
ttcgtcgtctcgaagattgctgacaatgatggaatggagtggttttctatcatcaccacccctaagtgagtttttcttacct |
27542963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 23258643 - 23258555
Alignment:
| Q |
30 |
ttttcgttgtctcgaaaattgctgacaatgatggaatggagtggttttctatcatcactacccctaagtgagtttttcttaccttttaa |
118 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
23258643 |
ttttcgttgtctcaaagattgctaacaatgatggaatggagtggttctctatcatcactacccctaagtaagtttttcttaacttttaa |
23258555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 23276521 - 23276433
Alignment:
| Q |
30 |
ttttcgttgtctcgaaaattgctgacaatgatggaatggagtggttttctatcatcactacccctaagtgagtttttcttaccttttaa |
118 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
23276521 |
ttttcgttgtctcaaagattgctaacaatgatggaatggagtggttctctatcatcactacccctaagtaagtttttcttaacttttaa |
23276433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 23268572 - 23268513
Alignment:
| Q |
292 |
aaagaggactgccgatgccattttcttccctcctccaaattaaagtagaatggaattaag |
351 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23268572 |
aaagaggaccgctgatgccattttcttccctcctccaaattaaagtagaatggaaataag |
23268513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 413 - 570
Target Start/End: Complemental strand, 23268441 - 23268275
Alignment:
| Q |
413 |
tctagtttataaagtttctgcacttttattttggatttataaggagttga----ttgcctcaaatgatttcttcgggttgacctctattttgatctttct |
508 |
Q |
| |
|
|||| ||||| |||||||| ||||| ||||||||||||| ||| | |||| ||||||||| | |||| || ||| |||||||| ||||||||| ||| |
|
|
| T |
23268441 |
tctactttattaagtttctacacttctattttggatttaaaagaaattgaatgattgcctcaatttattt-ttggggatgacctctcttttgatctgtct |
23268343 |
T |
|
| Q |
509 |
tta-------tattgctgccttagatatagttatttttctgtctataagatgcaatttttgcataatga |
570 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||| |||| ||| |||||||||| |||||| |
|
|
| T |
23268342 |
ttaatatttatattgctgccttatatatagttatttttcttcctat-ggatacaatttttgcttaatga |
23268275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 541
Target Start/End: Complemental strand, 27542598 - 27542497
Alignment:
| Q |
447 |
atttataagga-gttgattgcctcaaatgatttcttcgggttgacctctattttgatctttc-------tttatattgctgccttagatatagttatttt |
538 |
Q |
| |
|
||||||||||| |||||||||||||| || ||| || ||| |||||||||||||||||| || ||||||||| |||||||||||||||||| || |
|
|
| T |
27542598 |
atttataaggaagttgattgcctcaattggttt-ttggggatgacctctattttgatctgtctttaatatttatattgatgccttagatatagttatatt |
27542500 |
T |
|
| Q |
539 |
tct |
541 |
Q |
| |
|
||| |
|
|
| T |
27542499 |
tct |
27542497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 452
Target Start/End: Complemental strand, 27542632 - 27542603
Alignment:
| Q |
423 |
aaagtttctgcacttttattttggatttat |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27542632 |
aaagtttctgcacttttattttggatttat |
27542603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 156 - 342
Target Start/End: Complemental strand, 8985467 - 8985282
Alignment:
| Q |
156 |
tgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaagcgctatcacctacagttctacaagctgcttt |
255 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| |||||| || ||||||| |
|
|
| T |
8985467 |
tgattatgatttttgtttttt-cagtcctgtatttacacacatggctggaagttcttcggtgtggaaggccctatcacctagagttctgcagactgcttt |
8985369 |
T |
|
| Q |
256 |
caatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattaaagtagaat |
342 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8985368 |
caatgtagatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaat |
8985282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 8986130 - 8986042
Alignment:
| Q |
30 |
ttttcgttgtctcgaaaattgctgacaatgatggaatggagtggttttctatcatcactacccctaagtgagtttttcttaccttttaa |
118 |
Q |
| |
|
|||| |||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8986130 |
tttttgttgtctcaaagattgctgaaaatgatggaatggagtggttttctataatcactacccctaagtgagtttttcttaacttttaa |
8986042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 374 - 563
Target Start/End: Complemental strand, 8984697 - 8984503
Alignment:
| Q |
374 |
aaataagttttaacaagccattatagacaatagtttttatctagtttataaagtttctgca----cttttattttggatttataaggagttgattgcctc |
469 |
Q |
| |
|
||||||| || || ||||| ||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||| ||||||||||||||||| |
|
|
| T |
8984697 |
aaataagcttcaataagccgttatagacaatagtttttatctactttatgaagtttctggaattttttttattttggatttaaaaggagttgattgcctc |
8984598 |
T |
|
| Q |
470 |
aaatgatttcttcgggttgacctctattttgatctttcttt-ata-ttgctgccttagatatagttatttttctgtctataagatgcaatttttgc |
563 |
Q |
| |
|
| || || || ||| ||||||||| |||||| | ||||| ||| ||||||||||||| ||||||||||||| | || |||| |||||||||| |
|
|
| T |
8984597 |
cattggatttttagggatgacctcta-tttgatttgtctttaatatttgctgccttagacgtagttatttttcttcccattagatacaatttttgc |
8984503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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