View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292_low_1 (Length: 776)
Name: NF1292_low_1
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_1 |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold2084 (1 HSPs) |
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| [»] scaffold0971 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 325 - 776
Target Start/End: Original strand, 40551438 - 40551889
Alignment:
| Q |
325 |
gaagaacggagatgtggtgctggtgcacgtaactcaacaccttgaatatcttgggcaattgaagacctagtggtgtttattagaggtggtcttccagaga |
424 |
Q |
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||||||| |||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40551438 |
gaagaacaaagatgtggtgttgggacacttcactcaacaccttgaatatcttgggcaattgaagacctagtggtgtttattagaggtggtcttccagaga |
40551537 |
T |
|
| Q |
425 |
caccggataaagttcttgacatattgtaaccaggtggtaacatatgttgcgagttaggagcaatggagggacttggcaaactggtcgaaggaggctcacc |
524 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40551538 |
caccggagaaagttcttgacatattgtaaccaggtggtaacatatgttgcgagttaggagcaatggagggacttggcaaactggtcgaaggaggctcacc |
40551637 |
T |
|
| Q |
525 |
ggaagaagaaccagaaaccaagaatggtcgaatagcaacttgttgtctcgaaagttgatgcaactgctgcggaaatgaatctgaaatcaagatagtggtt |
624 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40551638 |
ggaagaagaaccagaaaccaagaatggtcgaatagcaacttgttgtctcgaaagttgatgcaactgctgcggaaatgaatctgaaatcaagatagtggtt |
40551737 |
T |
|
| Q |
625 |
agaaaaatactcgaaatagaaaactcagtgctacaagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagacatgaat |
724 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40551738 |
agaaaaatactcgaaatagaaaactcggtgctacaagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagatatgaat |
40551837 |
T |
|
| Q |
725 |
gcgaaataaccatgcataagagtacagatttaagtatgtaaatttgtcgccc |
776 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40551838 |
gcgaaataaccatgcataagagtacagatttaagtatgtaaatttgtcgccc |
40551889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 134 - 726
Target Start/End: Original strand, 40568468 - 40569059
Alignment:
| Q |
134 |
aggctaacctgcctgcactatcaggctggcgtctcattttgtggatcagactgatagcatggcg-tctttgccagagtgagacatgagcatacgagggag |
232 |
Q |
| |
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||||| ||||||||||||| |||||| |||||| ||||| |||||| ||||||||||| ||||| ||||||||| | |||||||||||||| ||||||| |
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| T |
40568468 |
aggctgacctgcctgcactgtcaggccggcgtcccattt-gtggattagactgatagcttggcggtctttgccaaggcgagacatgagcatatgagggag |
40568566 |
T |
|
| Q |
233 |
aagttgctcgaagattactaggtgctgtctgacttggaatcccgcgttgaagaggattgaaattggaaggtggaacagatattgagggtctagaagaacg |
332 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| |||| |||||| |||||||||| |||||||||||| | |
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|
| T |
40568567 |
aagttgctcgaagattactagctgctgtctgacttggaatcccacgttgaaggggattgaaactggagggtggagcagatattgaaggtctagaagaatg |
40568666 |
T |
|
| Q |
333 |
gagatgtggtgctggtgcacgtaactcaacaccttgaatatcttgggcaattgaagacctagtggtgtttattagaggtggtcttccagagacaccggat |
432 |
Q |
| |
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||||||||| || || ||||||| |||| |||||||||||||| ||||||||||||||||||| |||||||| || ||||||||| ||||| ||| ||| |
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| T |
40568667 |
gagatgtggagcaggggcacgtatctcaccaccttgaatatctcgggcaattgaagacctagtagtgtttatgaggggtggtcttgcagaggcactggag |
40568766 |
T |
|
| Q |
433 |
aaagttcttgacatattgtaaccaggtggtaacatatgttgcgagttaggagcaatggagggacttggcaaactggtcgaaggaggctcaccggaagaag |
532 |
Q |
| |
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||||||| |||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| |
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| T |
40568767 |
aaagttcccgacatattgtaaccaggtggtagcatgtgctgtgagttaggagcaatggagggacttggcagactggtcacaggagactcaccggaagaag |
40568866 |
T |
|
| Q |
533 |
aaccagaaaccaagaatggtcgaatagcaacttgttgtctcgaaagttgatgcaactgctgcggaaatgaatctgaaatcaagatagtggttagaaaaat |
632 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
40568867 |
aaccagaaaccaagaatggacgagtagcagcttgttgtctcgaaagttgatgcaaatgctgtggaagtgaatctgaaatcaagatagtggttagaaaaat |
40568966 |
T |
|
| Q |
633 |
actcgaaatagaaaactcagtgctacaagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagacatgaatgc |
726 |
Q |
| |
|
| |||| ||||||||||||||| |||| ||||| | |||||||| |||||||||||| | |||||||| ||||| ||||||||||||| |
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| T |
40568967 |
atgtgaaacagaaaactcagtgctgcaagtcatccacaattagtgatatgtatgcctgctgctgaatagaattagtaaac-aagacatgaatgc |
40569059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 29 - 270
Target Start/End: Original strand, 40551165 - 40551406
Alignment:
| Q |
29 |
agttagcaggagccacatctgacaaacgggaaataacgttcggggatgttatagtagattgattgctaacattcccaagtaaaccagagacaggtaagtt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40551165 |
agttagcaggagccacatctgacaaacgggaaataacgttcggggatgttatagtagattgattgctaacattcccaagtaa-ccagagacaggtaagtt |
40551263 |
T |
|
| Q |
129 |
aggagaggctaacctgcctgcactatcaggctggcgtctcattttgtggatcagactgatagcatggc-gtctttgccagagtgagacatgagcatacga |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40551264 |
aggagaggctaacctgcctgcactatcaggctggcgtcccattttgtggatcagactgatagcatggcggtctttgccagagtgagacatgagcatacga |
40551363 |
T |
|
| Q |
228 |
gggagaagttgctcgaagattactaggtgctgtctgacttgga |
270 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40551364 |
gggagaaggtgctcgaagattactaggtgctgtctgacttgga |
40551406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 40568387 - 40568468
Alignment:
| Q |
29 |
agttagcaggagccacatctgacaaacgggaaataacgttcggggatgttatagtagattgattgctaacattcccaagtaa |
110 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| || |||| ||| ||||||||||| |||||| |||||||||||| |
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| T |
40568387 |
agttagccggagccacatctgacaaacgtgaaataatatttgggggcgttttagtagattgactgctaaaattcccaagtaa |
40568468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 1e-37; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 529 - 772
Target Start/End: Original strand, 15110216 - 15110457
Alignment:
| Q |
529 |
gaagaaccagaaaccaagaatggtcgaatagcaacttgttgtctcgaaagttgatgcaactgctgcggaaatgaatctgaaatcaagatagtggttagaa |
628 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| | |||||| ||| ||| ||| ||||| | || || ||| ||| ||||||||| ||||| | |
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|
| T |
15110216 |
gaagaaccaaaaaccaagaatggtcgagtagcaacatattgtcttgaaggttaatgtaactgtcatgcaa--gagtcttaaaacaagatagtcgttagga |
15110313 |
T |
|
| Q |
629 |
aaatactcgaaatagaaaactcagtgctacaagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagacatgaatgcga |
728 |
Q |
| |
|
||| |||| | ||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||| | || |||||| || |
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|
| T |
15110314 |
aaacactcaagatagacaactcggtgctacaagccatccatatttagtgatttgtatggctgctattgaatagaatacataaacgacgagatgaatatga |
15110413 |
T |
|
| Q |
729 |
aataaccatgcataagagtacagatttaagtatgtaaatttgtc |
772 |
Q |
| |
|
|||| || ||||||||||||| || |||||| ||||||||||| |
|
|
| T |
15110414 |
aatattcacgcataagagtacaaatgtaagtacgtaaatttgtc |
15110457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 533 - 685
Target Start/End: Complemental strand, 15110211 - 15110059
Alignment:
| Q |
533 |
aaccagaaaccaagaatggtcgaatagcaacttgttgtctcgaaagttgatgcaactgctgcggaaatgaatctgaaatcaagatagtggttagaaaaat |
632 |
Q |
| |
|
||||| |||||||||| ||| || ||| |||||||||||| ||||| ||| ||||||| || |||| |||| ||||||||||||||| ||||||||||| |
|
|
| T |
15110211 |
aaccacaaaccaagaagggttgagtagaaacttgttgtcttgaaagatgaagcaactgatgtggaagagaatttgaaatcaagatagtcgttagaaaaat |
15110112 |
T |
|
| Q |
633 |
actcgaaatagaaaactcagtgctacaagctatccatatttagtgatttgtat |
685 |
Q |
| |
|
|| ||||| || ||||||||| ||| ||| || ||||||||||||||||||| |
|
|
| T |
15110111 |
acgcgaaacaggaaactcagttctataagtcattcatatttagtgatttgtat |
15110059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 697 - 772
Target Start/End: Complemental strand, 15110018 - 15109943
Alignment:
| Q |
697 |
aatagaatacataaacaaagacatgaatgcgaaataaccatgcataagagtacagatttaagtatgtaaatttgtc |
772 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |||||| ||| | | |||||||| ||||||||| ||||||||||| |
|
|
| T |
15110018 |
aatagaatacataaacgaagagatgaatgtgaaatatccactcgttagagtacaaatttaagtacgtaaatttgtc |
15109943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2084 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold2084
Description:
Target: scaffold2084; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 37 - 255
Target Start/End: Complemental strand, 699 - 482
Alignment:
| Q |
37 |
ggagccacatctgacaaacgggaaataacgttcggggatgttatagtagattgattgctaacattcccaagtaaaccagagacagg---taagttaggag |
133 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||| | ||||| |||||||||| ||||||||||||| ||||||| |||||| ||||||||||| |
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|
| T |
699 |
ggagccacatccgacaaacgtgaaataacattcggtggtgttaaagtagattgactgctaacattccc----aaaccagtgacaggtaataagttaggag |
604 |
T |
|
| Q |
134 |
aggctaacctgcctgcactatcaggctggcgtctcattttgtggatcagactgatagcatggc-gtctttgccagagtgagacatgagcatacgagggag |
232 |
Q |
| |
|
|||| | |||||| || | ||| || ||| || || |||| ||||||| ||||| |||| |||||||| || |||||||| ||||||| |||| || |
|
|
| T |
603 |
tggctgaactgcctacattgtcaagccggcatccca-attgtacatcagaccgatagtttggcggtctttgctagtgtgagacaagagcatatgaggaag |
505 |
T |
|
| Q |
233 |
aagttgctcgaagattactaggt |
255 |
Q |
| |
|
|||||| || ||| ||||||||| |
|
|
| T |
504 |
aagttgatcaaaggttactaggt |
482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0971 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0971
Description:
Target: scaffold0971; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 306 - 377
Target Start/End: Original strand, 2631 - 2702
Alignment:
| Q |
306 |
aacagatattgagggtctagaagaacggagatgtggtgctggtgcacgtaactcaacaccttgaatatcttg |
377 |
Q |
| |
|
||||||||||||| |||||||||||| |||| ||||| ||| |||||||||||||||||| |||||||||| |
|
|
| T |
2631 |
aacagatattgagcgtctagaagaacatagatatggtgttggggcacgtaactcaacacctcgaatatcttg |
2702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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