View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1292_low_12 (Length: 434)

Name: NF1292_low_12
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1292_low_12
NF1292_low_12
[»] chr8 (15 HSPs)
chr8 (1-326)||(31456515-31456827)
chr8 (327-422)||(4350769-4350864)
chr8 (327-421)||(34141960-34142054)
chr8 (360-418)||(9191169-9191227)
chr8 (327-416)||(22486699-22486787)
chr8 (360-421)||(26835693-26835754)
chr8 (366-422)||(13580456-13580512)
chr8 (365-420)||(38075786-38075840)
chr8 (327-421)||(22930257-22930351)
chr8 (370-422)||(7255379-7255431)
chr8 (366-421)||(28376631-28376687)
chr8 (328-421)||(13236100-13236194)
chr8 (353-410)||(21348504-21348561)
chr8 (248-304)||(23979070-23979126)
chr8 (376-416)||(43872463-43872503)
[»] chr4 (13 HSPs)
chr4 (323-421)||(23869979-23870077)
chr4 (331-419)||(55236220-55236309)
chr4 (329-421)||(3643244-3643334)
chr4 (326-421)||(29118406-29118501)
chr4 (352-421)||(6137165-6137234)
chr4 (378-420)||(7540513-7540555)
chr4 (362-425)||(12320374-12320438)
chr4 (326-421)||(7853230-7853325)
chr4 (330-421)||(36071656-36071747)
chr4 (378-422)||(25790450-25790494)
chr4 (379-419)||(35372204-35372243)
chr4 (378-422)||(47059677-47059721)
chr4 (378-422)||(47082081-47082125)
[»] chr1 (15 HSPs)
chr1 (330-421)||(1240366-1240457)
chr1 (326-421)||(23897994-23898089)
chr1 (161-229)||(49084530-49084598)
chr1 (327-421)||(23935124-23935218)
chr1 (352-414)||(35405285-35405346)
chr1 (328-420)||(10976216-10976308)
chr1 (327-421)||(8246819-8246911)
chr1 (330-416)||(22667683-22667769)
chr1 (329-422)||(45385334-45385427)
chr1 (328-418)||(34299057-34299147)
chr1 (388-422)||(35204313-35204347)
chr1 (341-422)||(1153822-1153903)
chr1 (354-418)||(40869-40933)
chr1 (330-422)||(3265563-3265655)
chr1 (365-421)||(29664165-29664221)
[»] chr7 (11 HSPs)
chr7 (327-421)||(15134550-15134644)
chr7 (353-418)||(30095862-30095927)
chr7 (327-410)||(21828097-21828180)
chr7 (366-421)||(35812589-35812644)
chr7 (366-418)||(21292832-21292884)
chr7 (372-422)||(26914441-26914490)
chr7 (365-425)||(3940746-3940806)
chr7 (378-414)||(36066100-36066136)
chr7 (378-421)||(49164865-49164908)
chr7 (332-422)||(40351866-40351956)
chr7 (378-418)||(37996496-37996536)
[»] chr6 (8 HSPs)
chr6 (341-422)||(10668976-10669057)
chr6 (328-421)||(12174257-12174350)
chr6 (341-416)||(13229257-13229332)
chr6 (326-418)||(35122053-35122145)
chr6 (355-418)||(33344760-33344823)
chr6 (378-417)||(34969383-34969422)
chr6 (367-421)||(4337990-4338044)
chr6 (378-418)||(13481670-13481710)
[»] chr2 (9 HSPs)
chr2 (329-412)||(16647942-16648025)
chr2 (327-418)||(37911368-37911459)
chr2 (327-421)||(5163728-5163822)
chr2 (351-421)||(34909438-34909508)
chr2 (360-425)||(17271358-17271423)
chr2 (361-421)||(4206661-4206720)
chr2 (371-419)||(34345878-34345926)
chr2 (378-422)||(40877023-40877067)
chr2 (391-421)||(28556704-28556734)
[»] chr5 (8 HSPs)
chr5 (360-421)||(7887286-7887347)
chr5 (328-421)||(20870571-20870664)
chr5 (327-421)||(3193621-3193715)
chr5 (327-423)||(18600128-18600224)
chr5 (360-421)||(39542379-39542440)
chr5 (369-421)||(12263747-12263799)
chr5 (378-422)||(32257783-32257827)
chr5 (326-402)||(23922444-23922520)
[»] chr3 (9 HSPs)
chr3 (327-418)||(15670854-15670945)
chr3 (326-421)||(11383527-11383621)
chr3 (366-420)||(33510197-33510252)
chr3 (378-420)||(54417122-54417164)
chr3 (378-421)||(27541167-27541210)
chr3 (327-416)||(52706765-52706854)
chr3 (388-420)||(17713273-17713305)
chr3 (382-422)||(18257984-18258024)
chr3 (388-420)||(19014502-19014534)
[»] scaffold0777 (1 HSPs)
scaffold0777 (330-421)||(5785-5875)
[»] scaffold0001 (1 HSPs)
scaffold0001 (326-421)||(64974-65067)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 31456515 - 31456827
Alignment:
Q  1 ctctttaccaaagtgattcattttaaatgcagtcacatctttagagaagaaaatgattgtacatataaattagctaatcagacgagtcatatcaaaatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||    
T  31456515 ctctttaccaaagtgattcattttaaatgcagtcacatctttagagaagagaatgattgtacatataaattagctaatcaga---gtcatatcaaaatat 31456611  T
Q  101 tggtttgcagtctaattgtccttacttcatcaggaatgagtttcttagagagagattatatgatacactatatacacgtatgtttggttctattgtggaa 200  Q
    ||||||| ||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31456612 tggtttgtagtctaattgtccttacttcatcaggaatgag----------agagattatatgatacactatatacacgtatgtttggttctattgtagaa 31456701  T
Q  201 gaactaaaattgtttctagttttgaatgttcttaagtataatcgaagaattggttctaacttaaaactaaaatctgtagttttttcttctccaattaatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31456702 gaactaaaattgtttctagttttgaatgttcttaagtataatccaagaattggttctaacttaaaactaaaatctttagttttttcttctccaattaatt 31456801  T
Q  301 tttagatcagataaagaggttacatg 326  Q
    ||||||||| ||||||||||||||||    
T  31456802 tttagatcacataaagaggttacatg 31456827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 422
Target Start/End: Complemental strand, 4350864 - 4350769
Alignment:
Q  327 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtat 422  Q
    ||||||||||||| |||||||||  ||||||| | ||||| ||||||||  ||||||| | || ||||||||||||||||| ||||||||||||||    
T  4350864 caggggtggccctgagggcgggcacgaggggcggtagccctgggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtat 4350769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 34141960 - 34142054
Alignment:
Q  327 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||||||| ||||| |||  |||| || ||||||||||||||||  || |||||| || ||||| ||||||||||| |||||||||||||    
T  34141960 caggggtggccctgagggcaggcgcgaggagcggcagcccagggcaccactttgttaggggcaccaaaactattatttttatttagtagttagta 34142054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 9191169 - 9191227
Alignment:
Q  360 gcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 418  Q
    |||||||||  |||||| ||||||||  |||||||||||||||||||||||||||||||    
T  9191169 gcagcccagaacaccatttttttaggagcatcaaaattattatttttacttagtagtta 9191227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 416
Target Start/End: Complemental strand, 22486787 - 22486699
Alignment:
Q  327 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagt 416  Q
    ||||||||||||| ||||| ||   ||||||| ||||||||||||| ||| |||||||||  | ||||||||||||| ||||||||||||    
T  22486787 caggggtggccctgagggcaggtgcgaggggcggcagcccagggcatcatttttttaggg-taccaaaattattattcttacttagtagt 22486699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 421
Target Start/End: Complemental strand, 26835754 - 26835693
Alignment:
Q  360 gcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||  ||||||| ||||||||| || ||||||||||||||||||||| |||||||||    
T  26835754 gcagcccatagcaccatttttttaggggcaccaaaattattatttttacttaatagttagta 26835693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 422
Target Start/End: Complemental strand, 13580512 - 13580456
Alignment:
Q  366 cagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtat 422  Q
    |||| |||||| ||||||||| || ||||||||||||||||||||| ||||||||||    
T  13580512 caggacaccatttttttaggggcaccaaaattattatttttacttaatagttagtat 13580456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 420
Target Start/End: Complemental strand, 38075840 - 38075786
Alignment:
Q  365 ccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagt 420  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  38075840 ccaggacaccat-tttttagggacatcaaaattattatttttacttagttgttagt 38075786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 22930257 - 22930351
Alignment:
Q  327 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||| | ||| |||||||||   ||||||  ||| |||||||||||| |||| |||| || ||||||||| ||||||||||| |||||||||    
T  22930257 caggggttgtcctgagggcgggcgcaaggggcgacagtccagggcaccattttttcaggggcaccaaaattataatttttacttaatagttagta 22930351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 7255379 - 7255431
Alignment:
Q  370 gcaccatatttttagggccatcaaaattattatttttacttagtagttagtat 422  Q
    |||||||||||||| || ||| ||||||| |||||||||||||| ||||||||    
T  7255379 gcaccatatttttaagggcattaaaattaatatttttacttagtggttagtat 7255431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 366 - 421
Target Start/End: Original strand, 28376631 - 28376687
Alignment:
Q  366 cagggcaccatattttt-agggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||||| ||||| || | || |||||||||||||||||||||||||||||||    
T  28376631 cagggcaccattttttttagcggcaccaaaattattatttttacttagtagttagta 28376687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 421
Target Start/End: Original strand, 13236100 - 13236194
Alignment:
Q  328 aggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattatta-tttttacttagtagttagta 421  Q
    ||||| || ||| |||| |||| ||||||||  || || ||||||||||  ||| |||| || ||||||||||| ||||||||||||||||||||    
T  13236100 aggggaggtcctgagggtgggcaggaggggcgacaacctagggcaccattgtttaaggggcaccaaaattattattttttacttagtagttagta 13236194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 21348561 - 21348504
Alignment:
Q  353 aggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttactt 410  Q
    |||||| ||||||||||||||||| ||| ||||| ||  |||||| ||||||||||||    
T  21348561 aggggcggcagcccagggcaccatttttgtaggggcactaaaattcttatttttactt 21348504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 23979126 - 23979070
Alignment:
Q  248 aattggttctaacttaaaactaaaatctgtagttttttcttctccaattaattttta 304  Q
    ||||| || |||||||||||||||||||||||  |||  |||| |||||||||||||    
T  23979126 aattgattataacttaaaactaaaatctgtagcatttgattctacaattaattttta 23979070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 43872463 - 43872503
Alignment:
Q  376 tatttttagggccatcaaaattattatttttacttagtagt 416  Q
    ||||||||||| |||| | ||||||||||||||||||||||    
T  43872463 tatttttaggggcatccatattattatttttacttagtagt 43872503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 323 - 421
Target Start/End: Original strand, 23869979 - 23870077
Alignment:
Q  323 catgcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||||||||||| |||||||||  |||||||  |||||||||||||||  ||||||||| || |||||||||||||||||||||||||||||||    
T  23869979 catgcaggggtggccctgagggcgggctcgaggggcgacagcccagggcaccacttttttaggggcaccaaaattattatttttacttagtagttagta 23870077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 55236220 - 55236309
Alignment:
Q  331 ggtggccctcagggcgggccggaggggcagcagcccagggcaccatattttt-agggccatcaaaattattatttttacttagtagttag 419  Q
    ||||||| | |||||||||  |||||||||||||||||| |||||| ||||| | || |||||||||||||||||||| |||||||||||    
T  55236220 ggtggccttgagggcgggcgcgaggggcagcagcccaggacaccattttttttaagggcatcaaaattattatttttatttagtagttag 55236309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 421
Target Start/End: Complemental strand, 3643334 - 3643244
Alignment:
Q  329 ggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||||| |||| |||| |||||||| | |||||| |||||||| |||||| || |||||||||||||| |||||||||||||||||||    
T  3643334 ggggtggccctgagggtgggcaggaggggcggtagcccatggcaccat-tttttaaggacatcaaaattatta-ttttacttagtagttagta 3643244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 421
Target Start/End: Original strand, 29118406 - 29118501
Alignment:
Q  326 gcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    |||||||||||||| |||||||||  ||||||  | ||| ||||||||||| ||| | ||| || |||||||||||||||||  ||||||||||||    
T  29118406 gcaggggtggccctgagggcgggctcgaggggtgggagctcagggcaccatttttattggggcaccaaaattattatttttatgtagtagttagta 29118501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 6137165 - 6137234
Alignment:
Q  352 gaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||| |||| ||||| |||||| ||||||||  ||| |||||||||||||||| |||||||||||||    
T  6137165 gaggggcggcagtccaggacaccatttttttaggagcattaaaattattatttttatttagtagttagta 6137234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 420
Target Start/End: Complemental strand, 7540555 - 7540513
Alignment:
Q  378 tttttagggccatcaaaattattatttttacttagtagttagt 420  Q
    ||||||||| |||||||||||||||||||||||| ||||||||    
T  7540555 tttttaggggcatcaaaattattatttttacttattagttagt 7540513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 362 - 425
Target Start/End: Original strand, 12320374 - 12320438
Alignment:
Q  362 agcccagggcaccatatttttagggccatcaaaattatta-tttttacttagtagttagtataat 425  Q
    |||||| | ||||||  |||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  12320374 agcccatgacaccattattttaggggcatgaaaattattactttttacttagtagttagtataat 12320438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 421
Target Start/End: Original strand, 7853230 - 7853325
Alignment:
Q  326 gcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    |||||||||||||| |||| |||| |||| ||| ||| || |||||| |||  | |||  | || |||| ||||||||||||||||||||||||||    
T  7853230 gcaggggtggccctaagggtgggcgggagaggcggcaacctagggcatcattatcttacaggcaccaaatttattatttttacttagtagttagta 7853325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 421
Target Start/End: Complemental strand, 36071747 - 36071656
Alignment:
Q  330 gggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    |||||||||  |||| |||| |||||||| |||| |||||  ||||| ||| ||||| ||  |||||||||||||||||||  |||||||||    
T  36071747 gggtggcccaaagggtgggcgggaggggcggcagtccaggttaccatttttctaggggcactaaaattattatttttacttgatagttagta 36071656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 25790450 - 25790494
Alignment:
Q  378 tttttagggccatcaaaattattatttttacttagtagttagtat 422  Q
    ||||||||| || ||||||||||||||||| ||| ||||||||||    
T  25790450 tttttaggggcaccaaaattattatttttatttaatagttagtat 25790494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 35372243 - 35372204
Alignment:
Q  379 ttttagggccatcaaaattattatttttacttagtagttag 419  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  35372243 ttttagggacatcaaa-ttattatttttacttagtagttag 35372204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 47059677 - 47059721
Alignment:
Q  378 tttttagggccatcaaaattattatttttacttagtagttagtat 422  Q
    |||| |||| || ||||||||||||||||||||| ||||||||||    
T  47059677 ttttaaggggcaccaaaattattatttttacttattagttagtat 47059721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 47082125 - 47082081
Alignment:
Q  378 tttttagggccatcaaaattattatttttacttagtagttagtat 422  Q
    |||| |||| || ||||||||||||||||||||| ||||||||||    
T  47082125 ttttaaggggcaccaaaattattatttttacttattagttagtat 47082081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 330 - 421
Target Start/End: Original strand, 1240366 - 1240457
Alignment:
Q  330 gggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    |||||||||| ||||||||  |||||||| |||||||||| |||||| ||||||||| ||  ||||||||||||||||||||||||||||||    
T  1240366 gggtggccctgagggcgggatggaggggcggcagcccaggacaccatttttttaggggcactaaaattattatttttacttagtagttagta 1240457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 326 - 421
Target Start/End: Complemental strand, 23898089 - 23897994
Alignment:
Q  326 gcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    |||||||||||||| |||| ||||  ||||||| ||||||||||| ||||| ||||||||| || ||||||||| |||||||||||||||||||||    
T  23898089 gcaggggtggccctgagggtgggcttgaggggcggcagcccagggaaccatttttttaggggcaccaaaattatcatttttacttagtagttagta 23897994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 49084530 - 49084598
Alignment:
Q  161 tgatacactatatacacgtatgtttggttctattgtggaagaactaaaattgtttctagttttgaatgt 229  Q
    |||| ||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||    
T  49084530 tgatgcactatatacacgtatgtttggttctactgtggaggagctaaaattgtttctagttttgaatgt 49084598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 23935124 - 23935218
Alignment:
Q  327 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||||||| | || ||||  ||||||| ||||||||||||||||| ||||||||| || ||||||||  |||||||||||||||||||||    
T  23935124 caggggtggccctgaaggtgggcttgaggggcggcagcccagggcaccatttttttagggtcaccaaaattaacatttttacttagtagttagta 23935218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 414
Target Start/End: Original strand, 35405285 - 35405346
Alignment:
Q  352 gaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagta 414  Q
    ||||||| ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||    
T  35405285 gaggggcggcagcccagggcaccat-tttttaggggcaccaaaattattatttttacttagta 35405346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 420
Target Start/End: Complemental strand, 10976308 - 10976216
Alignment:
Q  328 aggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagt 420  Q
    |||| ||||||| |||| |||| || ||||| |||| ||| |||||||| ||||||||| |||||||||||||| ||||| ||||| ||||||    
T  10976308 agggatggccctgagggtgggcgggcggggcggcagtccaaggcaccatttttttaggggcatcaaaattattagttttatttagtggttagt 10976216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 8246911 - 8246819
Alignment:
Q  327 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    |||||||||||||  ||| |||| | |||||| ||||  ||||||||||| ||||||||  || ||||||||||||||||||||| |||||||||    
T  8246911 caggggtggccctgcgggtgggcggaaggggcggcagttcagggcaccatttttttagg--caccaaaattattatttttacttaatagttagta 8246819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 416
Target Start/End: Complemental strand, 22667769 - 22667683
Alignment:
Q  330 gggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagt 416  Q
    ||||||| || ||||||||   ||||||| |||||| |||||||||| | ||||||| ||  |||||||||||||||| ||||||||    
T  22667769 gggtggctctgagggcgggtttgaggggcggcagcctagggcaccatttatttaggggcacaaaaattattatttttatttagtagt 22667683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 422
Target Start/End: Complemental strand, 45385427 - 45385334
Alignment:
Q  329 ggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtat 422  Q
    ||||||||||| |||| |||| |||| ||  |||||| ||| |||||| || | ||||  ||||||||||||||||||| ||||||||| ||||    
T  45385427 ggggtggccctgagggtgggcgggagaggtggcagcctaggacaccattttataaggggtatcaaaattattatttttatttagtagtttgtat 45385334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 418
Target Start/End: Complemental strand, 34299147 - 34299057
Alignment:
Q  328 aggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 418  Q
    ||||||| |||| |||| ||||  ||||||| |||||||||| ||||||  ||||| || ||  |||||| |||||||| |||||||||||    
T  34299147 aggggtgaccctgagggtgggctcgaggggcggcagcccaggacaccattcttttaagggcactaaaattgttatttttccttagtagtta 34299057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 422
Target Start/End: Complemental strand, 35204347 - 35204313
Alignment:
Q  388 catcaaaattattatttttacttagtagttagtat 422  Q
    ||||||||||||||||||||||||||| |||||||    
T  35204347 catcaaaattattatttttacttagtaattagtat 35204313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 422
Target Start/End: Complemental strand, 1153903 - 1153822
Alignment:
Q  341 agggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtat 422  Q
    ||||||| | |||||||| | ||| |||| |||||| ||||  ||| || || |||||||||||||| ||||||||||||||    
T  1153903 agggcggacgggaggggcggtagctcaggacaccatcttttagggggcaccacaattattatttttatttagtagttagtat 1153822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 418
Target Start/End: Complemental strand, 40933 - 40869
Alignment:
Q  354 ggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 418  Q
    ||||| || ||||| | |||||| || |||||| || |||||||||||||||||||| |||||||    
T  40933 ggggcggccgcccaagacaccattttattaggggcaccaaaattattatttttactttgtagtta 40869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 422
Target Start/End: Complemental strand, 3265655 - 3265563
Alignment:
Q  330 gggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtat 422  Q
    |||||||||| ||||  ||| |||||  | ||||| ||||||||||| || | | ||  | ||||||||||||||||||||| ||||||||||    
T  3265655 gggtggccctgagggtaggcgggaggaactgcagcacagggcaccattttataaagggaaccaaaattattatttttacttaatagttagtat 3265563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 29664165 - 29664221
Alignment:
Q  365 ccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||| |||||| |||||||||  |  ||||||||||||||||||||||| ||||||    
T  29664165 ccaggacaccatttttttagggatactaaaattattatttttacttagtaattagta 29664221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 15134644 - 15134550
Alignment:
Q  327 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||||||| |||||||||   |||||| ||||||||||||| || |||||||||| || ||||||||||||||||||||||||| |||||    
T  15134644 caggggtggccctgagggcgggcttaaggggcggcagcccagggcatcaaatttttaggggcaccaaaattattatttttacttagtagctagta 15134550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 30095927 - 30095862
Alignment:
Q  353 aggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 418  Q
    |||||| ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||    
T  30095927 aggggcggcagcccagggcaccatttttttaggggcaccaaaattattatttttacttagtagtta 30095862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 410
Target Start/End: Original strand, 21828097 - 21828180
Alignment:
Q  327 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttactt 410  Q
    ||||||||||||| |||| ||||  ||||||| ||||||||||||||||| | ||||||| ||| |||||||||||||||||||    
T  21828097 caggggtggccctgagggagggcgcgaggggctgcagcccagggcaccatttctttaggggcataaaaattattatttttactt 21828180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 421
Target Start/End: Original strand, 35812589 - 35812644
Alignment:
Q  366 cagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||| || ||||||    
T  35812589 cagggcaccatttttttaggggcatcaaaattattatttttacttaataattagta 35812644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 21292884 - 21292832
Alignment:
Q  366 cagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 418  Q
    ||||||||| | ||||||||| || ||||||||||||||||||||||||||||    
T  21292884 cagggcaccgtctttttaggggcaccaaaattattatttttacttagtagtta 21292832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 422
Target Start/End: Complemental strand, 26914490 - 26914441
Alignment:
Q  372 accatatttttagggccatcaaaattattatttttacttagtagttagtat 422  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  26914490 accatttttttagggt-atcaaaattattatttttacttagtagttagtat 26914441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 425
Target Start/End: Complemental strand, 3940806 - 3940746
Alignment:
Q  365 ccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtataat 425  Q
    |||||||| ||| |||||| |  |||| |||||||||||||||||||||||| ||||||||    
T  3940806 ccagggcatcatttttttaagcgcatccaaattattatttttacttagtagtaagtataat 3940746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 36066100 - 36066136
Alignment:
Q  378 tttttagggccatcaaaattattatttttacttagta 414  Q
    ||||||||| |||||||||||||||||||||||||||    
T  36066100 tttttagggtcatcaaaattattatttttacttagta 36066136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 421
Target Start/End: Complemental strand, 49164908 - 49164865
Alignment:
Q  378 tttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    |||||| || ||||| ||||||||||||||||||||||||||||    
T  49164908 tttttaagggcatcataattattatttttacttagtagttagta 49164865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 422
Target Start/End: Complemental strand, 40351956 - 40351866
Alignment:
Q  332 gtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtat 422  Q
    |||||||| |||| |||  |||||||| | ||||||||| || ||  ||||| || || |||| |||||||||||||| ||||||||||||    
T  40351956 gtggccctgagggtgggagggaggggcggaagcccagggtacaattattttaagggcaccaaagttattatttttactcagtagttagtat 40351866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 37996496 - 37996536
Alignment:
Q  378 tttttagggccatcaaaattattatttttacttagtagtta 418  Q
    |||||| || || ||||||||||||||||||||||||||||    
T  37996496 tttttatgggcaccaaaattattatttttacttagtagtta 37996536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 341 - 422
Target Start/End: Complemental strand, 10669057 - 10668976
Alignment:
Q  341 agggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtat 422  Q
    |||| |||| ||||||||||||| |||||||||||| ||||||||| || ||||||||||||||||||||| ||||||||||    
T  10669057 agggtgggcgggaggggcagcagtccagggcaccatttttttaggggcaccaaaattattatttttacttattagttagtat 10668976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 421
Target Start/End: Original strand, 12174257 - 12174350
Alignment:
Q  328 aggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    |||||||||||| ||||| ||| |||||||||| | || |||||||||| |||| || | || |||||||||||||||||||||||||||||||    
T  12174257 aggggtggccctgagggcaggcaggaggggcagtaacctagggcaccattttttaagaggcaccaaaattattatttttacttagtagttagta 12174350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 341 - 416
Target Start/End: Original strand, 13229257 - 13229332
Alignment:
Q  341 agggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagt 416  Q
    ||||||||| |||||||| |||||||| |||||||| ||||||| | || ||||||||||||||||||||||||||    
T  13229257 agggcgggcaggaggggcggcagcccaaggcaccatttttttagaggcaccaaaattattatttttacttagtagt 13229332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 418
Target Start/End: Complemental strand, 35122145 - 35122053
Alignment:
Q  326 gcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 418  Q
    |||||||| ||||| |||||||||  ||||||| ||||| || |||||||| |  |||||| || ||||||||||||||||||||||||||||    
T  35122145 gcaggggtagccctgagggcgggcttgaggggcggcagcacaaggcaccatttaattaggggcaccaaaattattatttttacttagtagtta 35122053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 33344760 - 33344823
Alignment:
Q  355 gggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 418  Q
    |||| |||||||| |||||||| |  |||||| || ||||||||||||||||||||||||||||    
T  33344760 gggcggcagcccaaggcaccatttaattaggggcaccaaaattattatttttacttagtagtta 33344823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 417
Target Start/End: Original strand, 34969383 - 34969422
Alignment:
Q  378 tttttagggccatcaaaattattatttttacttagtagtt 417  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  34969383 tttttaagggcatcaaaattattatttttacttagtagtt 34969422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 4338044 - 4337990
Alignment:
Q  367 agggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||||  ||||| || || ||||||||||| |||||||||||||||||||    
T  4338044 agggcaccattattttatgggcaccaaaattattacttttacttagtagttagta 4337990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 13481710 - 13481670
Alignment:
Q  378 tttttagggccatcaaaattattatttttacttagtagtta 418  Q
    ||||||||| ||||||||||||||||||| | |||||||||    
T  13481710 tttttaggggcatcaaaattattatttttccgtagtagtta 13481670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 412
Target Start/End: Complemental strand, 16648025 - 16647942
Alignment:
Q  329 ggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttag 412  Q
    ||||||||| | |||||||||  ||||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  16648025 ggggtggccgtgagggcgggcacgaggggcggcaacccagggcaccatttttttaggggcatcaaaattattatttttatttag 16647942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 327 - 418
Target Start/End: Original strand, 37911368 - 37911459
Alignment:
Q  327 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 418  Q
    ||||||||||||| || |||| |  ||||||| |||||||||| |||||| | ||||||| || |||||||||||||||| |||||||||||    
T  37911368 caggggtggccctgagcgcggccttgaggggcggcagcccaggacaccatttatttaggggcaccaaaattattatttttgcttagtagtta 37911459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 5163728 - 5163822
Alignment:
Q  327 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||| ||  |||| |||| |||||| |  ||||| ||||||| ||  |||||||| ||||||||||||||||||||||||||||||||||    
T  5163728 caggggtggtccagagggtgggcgggagggacgacagcctagggcactattattttaggggcatcaaaattattatttttacttagtagttagta 5163822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 34909508 - 34909438
Alignment:
Q  351 ggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    |||||| | ||||||||||| |||||  |||||||| ||| |||||||||||||||||||| |||||||||    
T  34909508 ggagggacggcagcccagggtaccattattttaggggcattaaaattattatttttacttactagttagta 34909438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 17271423 - 17271358
Alignment:
Q  360 gcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtataat 425  Q
    |||||||||||| | || |||||||||  | |||||||||||||||||||||||||| ||||||||    
T  17271423 gcagcccagggcgctatttttttaggggtaccaaaattattatttttacttagtagtcagtataat 17271358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 4206720 - 4206661
Alignment:
Q  361 cagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||  |||||| ||||||||| || |||||||||||| ||||||||||||||||||    
T  4206720 cagcccagaacaccat-tttttaggggcaccaaaattattatatttacttagtagttagta 4206661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 34345878 - 34345926
Alignment:
Q  371 caccatatttttagggccatcaaaattattatttttacttagtagttag 419  Q
    ||||||| ||| ||||  |||||||||||||||||||||||||||||||    
T  34345878 caccataatttgaggggaatcaaaattattatttttacttagtagttag 34345926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 40877067 - 40877023
Alignment:
Q  378 tttttagggccatcaaaattattatttttacttagtagttagtat 422  Q
    ||||||||| || |||||||||||||||||||| |||||||||||    
T  40877067 tttttagggacaccaaaattattatttttacttggtagttagtat 40877023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 421
Target Start/End: Complemental strand, 28556734 - 28556704
Alignment:
Q  391 caaaattattatttttacttagtagttagta 421  Q
    |||||||||||||||||||||||||||||||    
T  28556734 caaaattattatttttacttagtagttagta 28556704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 421
Target Start/End: Complemental strand, 7887347 - 7887286
Alignment:
Q  360 gcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    |||||||||||||||||   ||||||| || |||||||||||||||||||||||||||||||    
T  7887347 gcagcccagggcaccattggtttaggggcaccaaaattattatttttacttagtagttagta 7887286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 421
Target Start/End: Original strand, 20870571 - 20870664
Alignment:
Q  328 aggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||||||||||||||||  ||  ||| |||||  |||||||||| |||||| |   ||||||||||||||||||| |||||||||||||    
T  20870571 aggggtggccctcagggcgggcttgataggcggcagcttagggcaccatttttttaagagtatcaaaattattatttttatttagtagttagta 20870664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 3193715 - 3193621
Alignment:
Q  327 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||||||| |||||||||  ||||||| | ||||||||||||||| ||  || || || |||||||||||||||||  |||||| |||||    
T  3193715 caggggtggccctgagggcgggctcgaggggcgggagcccagggcaccattttcataagggcaccaaaattattatttttatgtagtaggtagta 3193621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 423
Target Start/End: Original strand, 18600128 - 18600224
Alignment:
Q  327 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagtata 423  Q
    ||||||| ||||| |||| |||| |||| ||| |  |||||||||||||  ||| ||||| ||||||||||||||||||||  ||||||||| ||||    
T  18600128 caggggtagccctgagggtgggcgggagaggcggtggcccagggcaccaattttataggggcatcaaaattattatttttatatagtagttattata 18600224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 421
Target Start/End: Original strand, 39542379 - 39542440
Alignment:
Q  360 gcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||  ||||||| |||  |||| ||||||||||||||||||||| ||||||||||||    
T  39542379 gcagcccatagcaccatttttacaggggcatcaaaattattatttttacgtagtagttagta 39542440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 12263799 - 12263747
Alignment:
Q  369 ggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    |||||||| ||||||||| || ||||||||||||||||||||| | |||||||    
T  12263799 ggcaccatttttttaggggcaccaaaattattatttttacttaatggttagta 12263747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 32257827 - 32257783
Alignment:
Q  378 tttttagggccatcaaaattattatttttacttagtagttagtat 422  Q
    ||||||||  ||||||||| |||||||||||||||||||||||||    
T  32257827 tttttaggagcatcaaaataattatttttacttagtagttagtat 32257783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 23922520 - 23922444
Alignment:
Q  326 gcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattat 402  Q
    |||||||||||||| |||||||||  ||| || | || |||||  |||||| | ||||||| |||||||||||||||    
T  23922520 gcaggggtggccctgagggcgggcttgagaggtaacaacccagaacaccatttgtttaggggcatcaaaattattat 23922444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 418
Target Start/End: Original strand, 15670854 - 15670945
Alignment:
Q  327 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagtta 418  Q
    ||||||||||||| ||||||||| |||||||  |||| |||||||||||  | ||| |||  |  |||||||||||||||||||||||||||    
T  15670854 caggggtggccctgagggcgggcgggaggggtggcagtccagggcaccaattattttgggaaagtaaaattattatttttacttagtagtta 15670945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 421
Target Start/End: Original strand, 11383527 - 11383621
Alignment:
Q  326 gcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    |||||||||||||| ||||  |||  ||||||| | |  |||||||||||  |||||||||| | ||||||||||||||||| |||||||||||||    
T  11383527 gcaggggtggccctgagggaaggcttgaggggcggaattccagggcaccacttttttagggc-accaaaattattatttttatttagtagttagta 11383621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 420
Target Start/End: Complemental strand, 33510252 - 33510197
Alignment:
Q  366 cagggcaccatatttttag-ggccatcaaaattattatttttacttagtagttagt 420  Q
    ||||||||||| ||||||  || |||||||||||||||||||||||||||||||||    
T  33510252 cagggcaccatttttttaatggacatcaaaattattatttttacttagtagttagt 33510197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 420
Target Start/End: Complemental strand, 54417164 - 54417122
Alignment:
Q  378 tttttagggccatcaaaattattatttttacttagtagttagt 420  Q
    ||||| ||||||||||||||||||||||||||| |||||||||    
T  54417164 tttttcgggccatcaaaattattatttttacttggtagttagt 54417122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 421
Target Start/End: Complemental strand, 27541210 - 27541167
Alignment:
Q  378 tttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||    
T  27541210 tttttaggggcatcaaaattattatttttatttagtaattagta 27541167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 416
Target Start/End: Complemental strand, 52706854 - 52706765
Alignment:
Q  327 caggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagt 416  Q
    |||| |||||||| ||||||| | ||||||||   || | ||| |||||| |||||| ||  ||||||||||||||||||| ||||||||    
T  52706854 caggagtggccctgagggcggacgggaggggcgatagtctaggacaccatttttttaagggtatcaaaattattatttttatttagtagt 52706765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 17713273 - 17713305
Alignment:
Q  388 catcaaaattattatttttacttagtagttagt 420  Q
    ||||||||||||||||||||||||||| |||||    
T  17713273 catcaaaattattatttttacttagtaattagt 17713305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 18258024 - 18257984
Alignment:
Q  382 tagggccatcaaaattattatttttacttagtagttagtat 422  Q
    ||||| ||||||| |||||||||||||||| ||||||||||    
T  18258024 tagggacatcaaatttattatttttacttaatagttagtat 18257984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 19014502 - 19014534
Alignment:
Q  388 catcaaaattattatttttacttagtagttagt 420  Q
    ||||||||||||||||||||||||||| |||||    
T  19014502 catcaaaattattatttttacttagtaattagt 19014534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 421
Target Start/End: Original strand, 5785 - 5875
Alignment:
Q  330 gggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    |||||||||| |||||||||  ||||||| | |||||| |||||||| ||  || || || ||||||||||||||||| | |||||||||||    
T  5785 gggtggccctgagggcgggctagaggggcgggagcccaaggcaccatcttcatatgggcaccaaaattattattttta-tgagtagttagta 5875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 421
Target Start/End: Original strand, 64974 - 65067
Alignment:
Q  326 gcaggggtggccctcagggcgggccggaggggcagcagcccagggcaccatatttttagggccatcaaaattattatttttacttagtagttagta 421  Q
    |||||||||||||| ||||||| | | |||| | | || ||| |||||||| ||||||||| || |||||||||||| ||||||||||| ||||||    
T  64974 gcaggggtggccctaagggcgg-cggaagggacggtagtccaaggcaccatttttttaggggca-caaaattattatatttacttagtaattagta 65067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University