View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292_low_17 (Length: 406)
Name: NF1292_low_17
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 394
Target Start/End: Original strand, 51962783 - 51963150
Alignment:
| Q |
30 |
aaatatttgtatttgacacaccggccttatgcataaaataataatacaatacatgcatcctagattctttattattaattacaaaaataaaacttgttgt |
129 |
Q |
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| T |
51962783 |
aaatatttgtatttgacacaccggccttatgcataaaataataatacaatacatgcatcctagattctttattattaattacaaaaataaaacttgttgt |
51962882 |
T |
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| Q |
130 |
atacattagctctgacttcggaggctgct--tgcatgtagatagttttttaattgcatataggtcagctaaatatactctcnnnnnnncccc-ttaacct |
226 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
51962883 |
gtacattagctctgacttcggaggctgctaatgcatgtagatagttttttaattgcatataggtcagctaaatatactctctttttttcccccttaacct |
51962982 |
T |
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| Q |
227 |
tcatgttctcaattaaagaggtttccataattcagagttcgatcaaaaaataaatttggattttccgaaacaaattgtgttaaccgaaactcatcaataa |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51962983 |
tcatgttctcaattaaagaggtttccataattcagagtttggtcaaaaaataaatttggattttccgaaacaaattgtgttaaccgaaactcatcaataa |
51963082 |
T |
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| Q |
327 |
cttgagttcaaccacttgattagcggcatgggttaatattatattcaaaagtttgaaattgatagtat |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51963083 |
cttgagttcaaccacttgattagcggcatgggttaatattatattcaaaagtttgaaattgatagtat |
51963150 |
T |
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