View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292_low_18 (Length: 406)
Name: NF1292_low_18
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 107 - 297
Target Start/End: Complemental strand, 4224922 - 4224730
Alignment:
| Q |
107 |
attggatcaacaagtcacatcatannnnnnnn-aatttaatggtgagatttattgatccaatagtaaa-attagtttgtgtacgatgcaagacatgtctc |
204 |
Q |
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| T |
4224922 |
attggatcaacaagtcacatcatatttctttttaatttaatgatgagatttattgatccaatagtaaatattagtttgtacatgatgcaagacatatctc |
4224823 |
T |
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| Q |
205 |
acttatacaccataaagttgaccgttatttagaggctcatttacaaattgcatcatggctttgacttttatttaattagttagaatcagagct |
297 |
Q |
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| T |
4224822 |
acttatacaccataaagttgaccgttatttacaggctcatttacaaattgcatcatggctttgacttttatttcattagttagaatcagagct |
4224730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 139 - 337
Target Start/End: Complemental strand, 4221701 - 4221503
Alignment:
| Q |
139 |
aatttaatggtgagatttattgatccaatagt-aaaattagtttgtgtacgatgcaagacatgtctcacttatacaccataaagttgaccgttatttaga |
237 |
Q |
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| T |
4221701 |
aatttaatggtgagatttattgatccaatagtgaaaattagtttgtgcgtgatgcaaga-atgtctcaattatacaccataaaattgaccgttatttaca |
4221603 |
T |
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| Q |
238 |
ggctcatttaca-aattgcatcatggctttgacttttatt--taattagttagaatcagagctgaagaagattttttaagtttttggggttgttgagtct |
334 |
Q |
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| T |
4221602 |
ggctcatttacacaatcgcatcattgctttgactttacttcattattagttagaatcagagct---aaagattttggatatttttggggttgttgagttt |
4221506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 3613936 - 3613968
Alignment:
| Q |
139 |
aatttaatggtgagatttattgatccaatagta |
171 |
Q |
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| T |
3613936 |
aatttaacggtgagatttattgatccaatagta |
3613968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 6863109 - 6863031
Alignment:
| Q |
139 |
aatttaatggtgagatttattgatccaatagt-aaaattagtttgtgtacgatgcaagacatgtctcacttatacacca |
216 |
Q |
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| T |
6863109 |
aatttaatggtgagatttattgatccaatggtggaaactagcttgtgtatgatgcaagacttgtctcacttatgcacca |
6863031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 34018254 - 34018331
Alignment:
| Q |
139 |
aatttaatggtgagatttattgatccaatagt-aaaattagtttgtgtacgatgcaagacatgtctcacttatacacc |
215 |
Q |
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| T |
34018254 |
aatttaatggtggaatttattgatccaatggtaaaaactagcttgtgcatgatgcaagacttgtctcacttatgcacc |
34018331 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 33155618 - 33155688
Alignment:
| Q |
139 |
aatttaatggtgagatttattgatccaatagt-aaaattagtttgtgtacgatgcaagacatgtctcactt |
208 |
Q |
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| T |
33155618 |
aatttaatggtgggatttattgatccaatggtgaaaactagcttgtgcatgatgcaagacttgtctcactt |
33155688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 7890448 - 7890383
Alignment:
| Q |
139 |
aatttaatggtgagatttattgatccaatagt-aaaattagtttgtgtacgatgcaagacatgtct |
203 |
Q |
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| T |
7890448 |
aatttaatggtgaaatttattgatccaatagtgaaaactactttgtgcatgatgcaatacttgtct |
7890383 |
T |
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