View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1292_low_24 (Length: 377)
Name: NF1292_low_24
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 32 - 341
Target Start/End: Complemental strand, 35354751 - 35354442
Alignment:
| Q |
32 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
35354751 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagagtgataacgagagtatagataatgatgatgaagtgctctatgaagccaatag |
35354652 |
T |
|
| Q |
132 |
tataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||| |
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| T |
35354651 |
tataaaaactccactggtccagcatgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatatcatgtatc |
35354552 |
T |
|
| Q |
232 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaacatagattaatgtttaatagaaagagtatt |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35354551 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaatgccaaacagtcaaaatcttaacatagattaatgtttaatagaaaaagtatt |
35354452 |
T |
|
| Q |
332 |
atttaaaggg |
341 |
Q |
| |
|
|||||||||| |
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|
| T |
35354451 |
atttaaaggg |
35354442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 32 - 281
Target Start/End: Complemental strand, 35369896 - 35369647
Alignment:
| Q |
32 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
131 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
35369896 |
gttcatacaagtgacaggctcagtgacaattgaagaatgatggtgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatag |
35369797 |
T |
|
| Q |
132 |
tataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatc |
231 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||| |
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|
| T |
35369796 |
tataaaaactcgactggtccagcatgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatatcatgtatc |
35369697 |
T |
|
| Q |
232 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaatg |
281 |
Q |
| |
|
|||| || |||| |||||||||||||| ||||| ||||||||||||||| |
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|
| T |
35369696 |
ctatgtagtataacagtgcagtgaacaaaatttggtcatccctgcaaatg |
35369647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 32 - 280
Target Start/End: Complemental strand, 35379255 - 35379007
Alignment:
| Q |
32 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
131 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
35379255 |
gttcatacaagtgataggctcagtgacaattgaagaatgatggtgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatag |
35379156 |
T |
|
| Q |
132 |
tataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatc |
231 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||| | |||| |
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|
| T |
35379155 |
tataaaaactcgactggtccagcatgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatataaagtatg |
35379056 |
T |
|
| Q |
232 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaat |
280 |
Q |
| |
|
||||| ||||||| ||| |||||||||| |||||||||||||||||||| |
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|
| T |
35379055 |
ctatacaatatacgagtacagtgaacaacatttgatcatccctgcaaat |
35379007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 32 - 301
Target Start/End: Complemental strand, 19684317 - 19684048
Alignment:
| Q |
32 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
131 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||||||||| || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
19684317 |
gttcataccagtgataggttcagtgacaattgaagaatgatggtgagaatggtaacgagaatatagataatgatgatgaagtgctctatgtagccaatag |
19684218 |
T |
|
| Q |
132 |
tataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatc |
231 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| || | || |||||||||||| |||| |
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|
| T |
19684217 |
tataagaactccactggtccagcatgcaagatagctgtaagaatcacaccatctgttctccaccatggtaagttggcagccataggaaatatcgtgtaaa |
19684118 |
T |
|
| Q |
232 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
301 |
Q |
| |
|
||||||| | | || |||||||||||||||||||||||||||||||||| |||||| | |||||||||| |
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|
| T |
19684117 |
gtatataaaacattaatgcagtgaacaatatttgatcatccctgcaaatgtcacacaatgaaaatcttaa |
19684048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 32 - 301
Target Start/End: Original strand, 19630480 - 19630749
Alignment:
| Q |
32 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
131 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
19630480 |
gttcatacaagtgataggctcggtgacaattgaagaatgatgatgagaatggtaacgagagtatagataatgatgatgaagtgctctatgtagccaatag |
19630579 |
T |
|
| Q |
132 |
tataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatc |
231 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||| ||||| |
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|
| T |
19630580 |
tataagaactccactggtccagcatgcaagagagctgtaagaaccacaccatctgttctccaccatggtaagttagcagccataggaaatattgtgtata |
19630679 |
T |
|
| Q |
232 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
301 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||||||||||||||| |||| | | |||||||||| |
|
|
| T |
19630680 |
gtatatagaaggttagtgcagtcaacaatatttgatcatccctgcaaatgtcacataatgaaaatcttaa |
19630749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 2258460 - 2258558
Alignment:
| Q |
54 |
gtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatagtataaaaactccactggtcca |
152 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| | ||| || || |||| |||||||||||||| |||| ||||||||| | |||||||||||||||| |
|
|
| T |
2258460 |
gtaacaatggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaatagtaaagaaactccactggtcca |
2258558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 2280450 - 2280553
Alignment:
| Q |
54 |
gtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatagtataaaaactccactggtccag |
153 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| | ||| || || |||| |||||||||||||| |||| |||||| || | ||| || |||| ||||| |
|
|
| T |
2280450 |
gtaacaatggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaataataaagaaattcaactgctccag |
2280549 |
T |
|
| Q |
154 |
catg |
157 |
Q |
| |
|
|||| |
|
|
| T |
2280550 |
catg |
2280553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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