View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1292_low_25 (Length: 371)
Name: NF1292_low_25
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 119983 - 120314
Alignment:
| Q |
11 |
cataggcatagcaagactaaaaagatttcactatacaagcagaaactaaaatgataaaaaagcatagcataagtttacagtgaagtctagtgactcaaca |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
119983 |
cataagcatagcaagactaaaaagatttcactatacaagcagaaactaaaatgataaaaaagcatagcataagtttacagtgaagtctagtgactcaaca |
120082 |
T |
|
| Q |
111 |
agaatcaaacaaccattaacaaattactgaatagaacctgaaagtatgattcctccaacaacttcaagttccaagctcctggctctcaaagttctaaact |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
120083 |
agaatcaaacaaccattaacaaattactgaatagaacctgaaagtatgattcctccaacaacttcaagttccaagctcctggctctcaaagttctaaact |
120182 |
T |
|
| Q |
211 |
atcttcttttaaatcctttaactttagaggtatgctttatagaagtagtactaagcaaaacttagaaaagtcaaagaaattaaattgtaataatccatta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
120183 |
atcttcttttaaatcctttaactttagaggtatgctttatagaagtagtactaagcaaaacttagaaaagtcaaagaaattaaattgtaataatccatta |
120282 |
T |
|
| Q |
311 |
ataaaatacagtggactccctcgtcctatatt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
120283 |
ataaaatacagtggactccctcgtcctatatt |
120314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 173886 - 173846
Alignment:
| Q |
68 |
aaaagcatagcataagtttacagtgaagtctagtgactcaa |
108 |
Q |
| |
|
|||| |||||||||| |||| |||||||||||||||||||| |
|
|
| T |
173886 |
aaaaacatagcataattttatagtgaagtctagtgactcaa |
173846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University