View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292_low_26 (Length: 355)
Name: NF1292_low_26
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 40319081 - 40319263
Alignment:
| Q |
30 |
caatcattattgagatcttttaatctttttggtattctcccagactccatgagaacgtgaaaaagtcctaagcctcttatttatagttattcatataaaa |
129 |
Q |
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| T |
40319081 |
caatcattattgagatcttttaatctttttggtattctcccagactccatgagaacgtgaaaaagtcctaagcctcttatttatagttattcatataa-- |
40319178 |
T |
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| Q |
130 |
atggaggtcggtttaatcacatttagagattgattcaagtgcgtcatgagtag----tataaattttatttcagtttgtaggagtcttttatcttt |
221 |
Q |
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| T |
40319179 |
-----------tataatcacatttagagattgattcaagtgcgtcatgagtagtatatataaactttatttcagtttgttggagtcttttatcttt |
40319263 |
T |
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