View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1292_low_29 (Length: 333)

Name: NF1292_low_29
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1292_low_29
NF1292_low_29
[»] chr4 (4 HSPs)
chr4 (8-192)||(55205731-55205915)
chr4 (121-234)||(55203337-55203449)
chr4 (168-224)||(10032286-10032342)
chr4 (174-224)||(1856676-1856726)
[»] chr7 (5 HSPs)
chr7 (8-195)||(46513396-46513583)
chr7 (8-220)||(46164460-46164675)
chr7 (8-81)||(10091686-10091757)
chr7 (171-220)||(46169318-46169367)
chr7 (12-81)||(26339860-26339928)
[»] chr1 (5 HSPs)
chr1 (8-133)||(48986130-48986260)
chr1 (171-220)||(48990904-48990953)
chr1 (171-216)||(25491998-25492043)
chr1 (171-224)||(52433030-52433083)
chr1 (165-220)||(48986045-48986101)
[»] chr3 (2 HSPs)
chr3 (166-201)||(34374786-34374821)
chr3 (166-224)||(34374007-34374065)
[»] scaffold0060 (1 HSPs)
scaffold0060 (171-224)||(11167-11221)
[»] chr2 (2 HSPs)
chr2 (168-224)||(18259213-18259270)
chr2 (8-56)||(10258339-10258387)
[»] chr6 (1 HSPs)
chr6 (168-224)||(6356377-6356433)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 55205731 - 55205915
Alignment:
Q  8 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattctgagggaagcagagagtgagtaaagttcatgtacga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||    
T  55205731 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattccgagggaagcagagagtgagtaaagttcacgtaaga 55205830  T
Q  108 gagaagaagaagagaagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgatgttttgtttatttttaatctgaa 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  55205831 gagaagaagaagagaagcgcgtgtttctcctctattttgttttttaattaaaaaaaactgatgttttgtttatttttaatctgaa 55205915  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 55203449 - 55203337
Alignment:
Q  121 gaagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgatgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 220  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55203449 gaagcgcgtgtttctcctctattttgttttttaattaaaaaa-gctgatgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 55203351  T
Q  221 ttcaataaacgaat 234  Q
    ||||||||||||||    
T  55203350 ttcaataaacgaat 55203337  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 10032286 - 10032342
Alignment:
Q  168 atgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 224  Q
    ||||||||||||||||||||||||| |||||||||| ||| |  |||||||||||||    
T  10032286 atgttttgtttatttttaatctgaatcattgaatccttttttgtcacatgtcattca 10032342  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 1856676 - 1856726
Alignment:
Q  174 tgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 224  Q
    |||||||||| ||||||||||||||||||| ||| | ||||||||||||||    
T  1856676 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattca 1856726  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 46513396 - 46513583
Alignment:
Q  8 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattctgagggaagc---agagagtgagtaaagttcatgta 104  Q
    |||||||||||||| ||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||||||||   | |||| | |||| ||||| |||    
T  46513396 tgagatgaacggcgacacaatcggcggttgttggtgctggtgaga-ggggagacgaagagattctgagggaagctcaaaagagagtgtaacgttcacgta 46513494  T
Q  105 cgag-agaagaagaagagaagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgatgttttgtttatttttaatctgaacca 195  Q
    | || ||||| |||||| ||||||||| |||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||    
T  46513495 ctagaagaag-agaagacaagcgcgtg-ttctcctctatttttttttttaatt-aaaaaagctgatgttttgtttatttttaatctgaacca 46513583  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 46164675 - 46164460
Alignment:
Q  8 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattctgagggaagc-----agagagtgagtaaagttcatg 102  Q
    |||||||||||||||||||||||| |||||||||||||||||| |  |||| |||||||| |||| ||||||||     |||||||| | || ||||| |    
T  46164675 tgagatgaacggcggcacaatcggcggttgttggcgctgatgaca--gggaaacgaagaggttctaagggaagctgaaaagagagtgggcaacgttcacg 46164578  T
Q  103 tacgagagaaga--agaagagaagcgcgtgttt-ctc-ctctattttgttttttaattnnnnnnngctgatg-ttttgtttatttttaatctgaaccatt 197  Q
    || || ||||||  ||||||||||||||||||| ||| |||| | || ||| ||||          |||||| |||||||||||||||||||||||||||    
T  46164577 tatgaaagaagaagagaagagaagcgcgtgtttgctctctctctcttttttattaa-----aaaaactgatgtttttgtttatttttaatctgaaccatt 46164483  T
Q  198 gaatccctttcttccacatgtca 220  Q
    |||||| ||| | ||||||||||    
T  46164482 gaatccatttttgccacatgtca 46164460  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 10091757 - 10091686
Alignment:
Q  8 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattctgagggaagc 81  Q
    |||||||||||||||||||||||  ||||||||||||||||||||  |||| |||||||| || ||||||||||    
T  10091757 tgagatgaacggcggcacaatcgacggttgttggcgctgatgaga--gggaaacgaagaggttttgagggaagc 10091686  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 46169318 - 46169367
Alignment:
Q  171 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 220  Q
    |||||||||||||||||||||| |||||||||| ||| | ||||||||||    
T  46169318 ttttgtttatttttaatctgaatcattgaatccatttttgccacatgtca 46169367  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 26339860 - 26339928
Alignment:
Q  12 atgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattctgagggaagc 81  Q
    ||||||||||| | |||||  | ||||||||| |||||||| ||||||| |||||||||| |||||||||    
T  26339860 atgaacggcggaataatcgacgattgttggcggtgatgaga-ggggagaggaagagattccgagggaagc 26339928  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 48986260 - 48986130
Alignment:
Q  8 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattctgagggaagc-----agagagtgagtaaagttcatg 102  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |  |||| |||||||| |||| ||||||||     |||||||| |||| ||||| |    
T  48986260 tgagatgaacggcgacacaatcggcggttgttggcgctgatgaca--gggaaacgaagaggttctaagggaagctgaaaagagagtgggtaacgttcacg 48986163  T
Q  103 tacgagagaaga--agaagagaagcgcgtgttt 133  Q
    || || ||||||  |||||||||||||||||||    
T  48986162 tatgaaagaagaagagaagagaagcgcgtgttt 48986130  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 48990904 - 48990953
Alignment:
Q  171 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 220  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  48990904 ttttgtttatttttaatctgaaccattgaatccatttttgccacatgtca 48990953  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 25491998 - 25492043
Alignment:
Q  171 ttttgtttatttttaatctgaaccattgaatccctttcttccacat 216  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||    
T  25491998 ttttgtttatttttaatctgaaccattgaatccatttttgccacat 25492043  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 52433083 - 52433030
Alignment:
Q  171 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 224  Q
    ||||||||||||||||||||||||||||||| | ||| | |||| |||||||||    
T  52433083 ttttgtttatttttaatctgaaccattgaattcatttgtgccacgtgtcattca 52433030  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 48986101 - 48986045
Alignment:
Q  165 ctgatgtttt-gtttatttttaatctgaaccattgaatccctttcttccacatgtca 220  Q
    |||||||||| |||||||||||||||||| |||||||||| ||| | ||||||||||    
T  48986101 ctgatgtttttgtttatttttaatctgaatcattgaatccatttttgccacatgtca 48986045  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 34374786 - 34374821
Alignment:
Q  166 tgatgttttgtttatttttaatctgaaccattgaat 201  Q
    ||||||||||||||||||||||||||||||||||||    
T  34374786 tgatgttttgtttatttttaatctgaaccattgaat 34374821  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 34374065 - 34374007
Alignment:
Q  166 tgatgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 224  Q
    ||||||||| |||||||||||||| ||||||||||||  ||| | ||||||||||||||    
T  34374065 tgatgttttatttatttttaatctaaaccattgaatcattttttgccacatgtcattca 34374007  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 11221 - 11167
Alignment:
Q  171 ttttgtttatttttaatctgaaccattgaatccctttctt-ccacatgtcattca 224  Q
    ||||| ||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  11221 ttttgattatttttaatctgaaccattgaatcctttttttaccacatgtcattca 11167  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 18259213 - 18259270
Alignment:
Q  168 atgttttgtttatttttaa-tctgaaccattgaatccctttcttccacatgtcattca 224  Q
    ||||||||||||||||||| | ||||||||||||||  ||| | ||||||||||||||    
T  18259213 atgttttgtttatttttaaatatgaaccattgaatctttttttgccacatgtcattca 18259270  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 10258339 - 10258387
Alignment:
Q  8 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggg 56  Q
    |||||||||||| || ||||||||||| || ||||| ||||||||||||    
T  10258339 tgagatgaacggtggtacaatcggtggatggtggcggtgatgagagggg 10258387  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 6356377 - 6356433
Alignment:
Q  168 atgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 224  Q
    |||||||| ||||||| ||||||||| ||||||||  ||| | ||||||||||||||    
T  6356377 atgttttgattattttaaatctgaacaattgaatcgatttttaccacatgtcattca 6356433  T

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