View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292_low_31 (Length: 325)
Name: NF1292_low_31
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 5998945 - 5999256
Alignment:
| Q |
1 |
agatgcggccatgttacgagctatctattgacattggcattgctggtctttgcattcattgttatgtcgttccagaattcaaagggcaccgtgggatgac |
100 |
Q |
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| T |
5998945 |
agatgcggccatgttacgagctatctattgacattggcattgctggtctttgcgttcattgttatgtcgttccagaattcaaagggcaccgtgggatgac |
5999044 |
T |
|
| Q |
101 |
ataccattgttattcatgtggtgatgatgcttatgttcttgttataggttccttaatatctagttcgataacctttttcctgtaatgttgacttgaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5999045 |
ataccattgttattcatgtggtgatgatgcttatgttcttgttataggttccttaatatctagttcgataacctttttcctgtaatgttgacttgaagaa |
5999144 |
T |
|
| Q |
201 |
agaatcctggtaatggctaagcttcaaaatttgcaaaatgtaaattgatcctatattctagtttaagttaccatgggtgtttaaatttgtagtattttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5999145 |
agaatcctggtaatggctaagcttcaaaatttgcaaaatgtaaattgatcctatattctagtttaagttaccatgggtgtttaaatttgtagtattttgt |
5999244 |
T |
|
| Q |
301 |
gactggcaatat |
312 |
Q |
| |
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|||||||||||| |
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| T |
5999245 |
gactggcaatat |
5999256 |
T |
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