View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292_low_40 (Length: 251)
Name: NF1292_low_40
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2031855 - 2032094
Alignment:
| Q |
1 |
cattgtcatctcattcaagaaaaatcttctaannnnnnncttt-aaagacaccacatttttctcaccctcaatataagatattgattttttcaattaatt |
99 |
Q |
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| T |
2031855 |
cattgtcatctcattcaagaaaaatcttctaactttttttttttaaagacaccgcatttt-ctcaccctcaatataagatattgattttttcaattaatt |
2031953 |
T |
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| Q |
100 |
acaagatcacgctttgaattaactatagaaaaaccttagttgcatcacagcaaaacaaatccaacaaatcatcacaaaacataaatttcttattaatgat |
199 |
Q |
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| T |
2031954 |
acaagatcacactttgaattaactatagaaaaaccttagttgcatcacagcaaaaccaatccaacaaatcatcacaaaacataaatttcttattaatgat |
2032053 |
T |
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| Q |
200 |
cattttcttcacaaaatcaagttcctcaacaactagttcat |
240 |
Q |
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| T |
2032054 |
cattttcttcacaaaatcaagttcctcaacaactagttcat |
2032094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 29839763 - 29839687
Alignment:
| Q |
157 |
aatccaacaaatcatcacaaaacataaatttcttattaatgatcattttcttcacaaaatcaagttcctcaacaact |
233 |
Q |
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|||||||||||||||||| | |||||||||| ||| ||| | |||||||||||||||||||||||||||||| |
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| T |
29839763 |
aatccaacaaatcatcacgggaggtaaatttctttttagtgaaaaagttcttcacaaaatcaagttcctcaacaact |
29839687 |
T |
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