View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292_low_42 (Length: 251)
Name: NF1292_low_42
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 34975937 - 34976177
Alignment:
| Q |
1 |
ctccatgaaattagggtttcctaacgctccattagctccaaataagttacttaggtgagaaaattgcacatcagggaaagaaagttgaagatctttaggg |
100 |
Q |
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| T |
34975937 |
ctccatgaaattagggtttcctaacgctccattggctccaaataagttacttaggtgagaaaattgcacatcagggaaagaaagttgaagatctttaggg |
34976036 |
T |
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| Q |
101 |
ttttgatggtaggaaggtacatgatgtggttggttttgaatattagtattagctaagtgatcatttgattttttggaagaaacnnnnnnnnnnnnnctac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34976037 |
ttttgatggtaggaaggtacatgatgtggttggttttgaatattagtattagctaagtgatcatttgattttttggaagaaacttttttgttttttctac |
34976136 |
T |
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| Q |
201 |
agcctccaccaacagggatgttcctaagtgttcctcctttg |
241 |
Q |
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| T |
34976137 |
agcctccaccaacagggatgttcctaagtgttcctcctttg |
34976177 |
T |
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