View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292_low_44 (Length: 251)
Name: NF1292_low_44
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_44 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 53 - 251
Target Start/End: Complemental strand, 44857418 - 44857220
Alignment:
| Q |
53 |
gttctgaaactgaactagaagatggttctgtttcatgcaacaaatgcagaccacattctcgtgacaaaatctttatccttccctttgatcattccaacaa |
152 |
Q |
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| T |
44857418 |
gttctgaaactgaactagaagatggttctgtttcatgcaacaaatgcagaccacattctcgtgacaaaatctttatccttccctttgatcattccaacaa |
44857319 |
T |
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| Q |
153 |
cagcaacagtaacagcaagtattcatctttgttgcaaagtccaaatgggattttcaaatccattgtttcaaagctaacaagaaaaagtccaatgtcaac |
251 |
Q |
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| T |
44857318 |
cagcaacagtaacagcaagtattcatctttgttgcaaagtccaaatgggattttcaaatccattgtttcaaagctaacaagaaaaagtccaatgtcaac |
44857220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 118 - 251
Target Start/End: Complemental strand, 37221787 - 37221654
Alignment:
| Q |
118 |
aaaatctttatccttccctttgatcattccaacaacagcaacagtaacagcaagtattcatctttgttgcaaagtccaaatgggattttcaaatccattg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37221787 |
aaaatctttatccttccctttgatcattccaacaacagcaacagtaacagcaagtattcatctttgctgcaaagtccaaatgggattttcaaatccattg |
37221688 |
T |
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| Q |
218 |
tttcaaagctaacaagaaaaagtccaatgtcaac |
251 |
Q |
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| T |
37221687 |
tttcaaagctaacaagaaaaagtccaatgtcaac |
37221654 |
T |
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