View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292_low_49 (Length: 228)
Name: NF1292_low_49
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_49 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 2031426 - 2031643
Alignment:
| Q |
7 |
gatattgaagagttaaaataattgaaccctgagaaaggccaagagttttgaaaaaacaagccnnnnnnnatgaagacttttttcttcatctgtttgtaac |
106 |
Q |
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| T |
2031426 |
gatattgaagagttaaaataattgaaccctgagaaaggccaagagttttgaaaaaacaatcctttttttacgaagacttttttcttcatctgtttgtaac |
2031525 |
T |
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| Q |
107 |
atatgaatcatttctcaaaaaaccaacaaatgtgtttgcaatnnnnnnnnnnnnnnnnnnngcttcttgagcagtatcaaaaaacatccaaactaatgat |
206 |
Q |
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| T |
2031526 |
atatgaatcatttctcaaaaaaccaacaaatgtgtttgcaat----aaaaaaaaatgaaaagcttcttgagcagtatcaaaaaacatccaaatcaatgat |
2031621 |
T |
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| Q |
207 |
aggttaaattatcatcttgtct |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
2031622 |
aggttaaattatcatcttgtct |
2031643 |
T |
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