View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292_low_5 (Length: 562)
Name: NF1292_low_5
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 13 - 533
Target Start/End: Original strand, 17340028 - 17340548
Alignment:
| Q |
13 |
tagggaaccaaaccattattggctaagtagcaaccccacccttttgcctttgaaaataaatgcatgaaacgcaaatattagagcaaaaatactttagaaa |
112 |
Q |
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| T |
17340028 |
tagggaaccaaaccattattggctaagtagcaaccccacccttttgcctttgaaaataaatgcatgaaacacaaatattagagcaaaaatactttagaaa |
17340127 |
T |
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| Q |
113 |
tagaccgtattttaaatctatataataaaaccatattctttttcattcactactcattggacatgggatattcagtaactacataagccagtccacaagg |
212 |
Q |
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| T |
17340128 |
tagaccgtattttaaatctatataataaaaccatattctttttcattcactactcattggacatgggatattcagtaactacataagccagtccacaagg |
17340227 |
T |
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| Q |
213 |
aaaaattgctaatcttccttcatattttgtgtctttttcaaggtccaagaaaaggacttttttatagtatgccttacttattttaaaaaggtgtnnnnnn |
312 |
Q |
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| T |
17340228 |
aaaaattgctaatcttccttcatattttgtgttcttttcaaggtccaagaaaaggacttttttatagtatgccttacttattttaaaaaggtgtaaaaaa |
17340327 |
T |
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| Q |
313 |
nnctacaaggaattaaaataagtaagtgggttcacacttttacttgtaaaatacaatcataatacctattcaaccaaattgttcgattttagatgtgaaa |
412 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17340328 |
aactacaaggaattaaaataagtaagtggtttcacactttttcttgtaaaatacaataataatacctattcaaccaaattgttcgattttagatgtgaaa |
17340427 |
T |
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| Q |
413 |
tctaagcaattatgtaccagtgtttccattttattttcccaatttgattttaaacttcttcttctctttagtttgaattggattcttcttgccattcatg |
512 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17340428 |
tctaagcaattatgtaccaatgtttgcattttattttcccaatttgattttcaacttcttcttctctttagtttgaattggattcttcttgccattcatg |
17340527 |
T |
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| Q |
513 |
atcctcaagctttgccttaac |
533 |
Q |
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||||||||||||||||||||| |
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| T |
17340528 |
atcctcaagctttgccttaac |
17340548 |
T |
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