View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292_low_50 (Length: 223)
Name: NF1292_low_50
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_50 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 51458620 - 51458500
Alignment:
| Q |
1 |
tctaagccggttctacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458620 |
tctaagccggttctacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctct |
51458521 |
T |
|
| Q |
101 |
ccgaaaaatatcccagagagc |
121 |
Q |
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||||||||||||||||||||| |
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| T |
51458520 |
ccgaaaaatatcccagagagc |
51458500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 30204068 - 30204175
Alignment:
| Q |
14 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
113 |
Q |
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|||||||||||||||| ||||| |||||| |||||||||||||||||||||| || |||||| | |||||| ||||||||||||||||||||||||||| |
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| T |
30204068 |
tacctgctttaaaggagagcaatagacatgcctgaactctctgaaatgcttctttaaatattcttccaatttaggtacatcctctctccgaaaaatatcc |
30204167 |
T |
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| Q |
114 |
cagagagc |
121 |
Q |
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|||||||| |
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| T |
30204168 |
cagagagc |
30204175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 51483175 - 51483068
Alignment:
| Q |
14 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
113 |
Q |
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|||||||||||||||| ||||| |||||| ||||||||| |||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
51483175 |
tacctgctttaaaggagagcaatggacatgcctgaactctttgaaatgcttctttaaatattcctccaattcaggtacatcctctctccgaaaaatatcc |
51483076 |
T |
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| Q |
114 |
cagagagc |
121 |
Q |
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|| ||||| |
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| T |
51483075 |
caaagagc |
51483068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 51500012 - 51499905
Alignment:
| Q |
14 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
113 |
Q |
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|||||||||||||||| | | | |||||| |||||||||||||||||||||| || |||||||| ||| || || |||||||||||||||||||||||| |
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| T |
51500012 |
tacctgctttaaaggagaggagtggacatgcctgaactctctgaaatgcttctttaaatattcctccaacttaggaacatcctctctccgaaaaatatcc |
51499913 |
T |
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| Q |
114 |
cagagagc |
121 |
Q |
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|||||||| |
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| T |
51499912 |
cagagagc |
51499905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 43162890 - 43162770
Alignment:
| Q |
1 |
tctaagccggttctacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctct |
100 |
Q |
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||||||| | || |||||||||||||||| |||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |
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| T |
43162890 |
tctaagctgattttacctgctttaaaggactgcaattgacatgtctgaactctctgaaatgcttttttatatattccttcaatttgggtacatcctctct |
43162791 |
T |
|
| Q |
101 |
ccgaaaaatatcccagagagc |
121 |
Q |
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||||||||||||||||||||| |
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| T |
43162790 |
ccgaaaaatatcccagagagc |
43162770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 27398647 - 27398540
Alignment:
| Q |
14 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
113 |
Q |
| |
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||||| || ||||||| ||||| |||||| |||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
27398647 |
tacctcctctaaaggagagcaatggacatgcctgaactctctgaaatgcttcttcagatattcctgcaatgcaggtacatcctctctccgaaaaatatcc |
27398548 |
T |
|
| Q |
114 |
cagagagc |
121 |
Q |
| |
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|| ||||| |
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| T |
27398547 |
caaagagc |
27398540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 20866760 - 20866867
Alignment:
| Q |
14 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
113 |
Q |
| |
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|||||||||||||||| |||| || ||| |||||||||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
20866760 |
tacctgctttaaaggagaacaatagatatgcctgaactctccagaatgcttcttcagatattccttcaatttcggcacatcctctctccgaaaaatatcc |
20866859 |
T |
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| Q |
114 |
cagagagc |
121 |
Q |
| |
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||| |||| |
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| T |
20866860 |
cagtgagc |
20866867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 135504 - 135611
Alignment:
| Q |
14 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
113 |
Q |
| |
|
|||||||||||||||| ||||| || ||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
135504 |
tacctgctttaaaggagagcaatagatatgcctgaactctctgaaatgcttcatcagatattccttcaatttaggtacatcctctctccgaaaaatatcc |
135603 |
T |
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| Q |
114 |
cagagagc |
121 |
Q |
| |
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|||||||| |
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|
| T |
135604 |
cagagagc |
135611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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