View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292_low_6 (Length: 541)
Name: NF1292_low_6
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_6 |
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| [»] scaffold0152 (1 HSPs) |
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Alignment Details
Target: scaffold0152 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 11182 - 11719
Alignment:
| Q |
1 |
ggattttgtgagctcacgcttgatatagcggcgatgcctgcgctgaagatggtagatgactgtgaaaatttgtgggagtgtactctggtctttgagagac |
100 |
Q |
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| T |
11182 |
ggattttgtgagctcacgcttgatatagcg---atgcctgcgctgaagatggtagatgactgtgaaaatttgtgggagtgtactctggtctttgagagac |
11278 |
T |
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| Q |
101 |
gtccttatgttcagtttaaaattgatagtggtttttcaatcgaatggttcttgctagaaaggctttgtgaaggttctaatgtgatggtttggtgcaccgg |
200 |
Q |
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| T |
11279 |
gtccttatgttcagtttaaaattgatagtggttt--caatcgaatggttcttgctagaa-ggctttgtgaaggttctaatgtgatggtt-ggtgcaccgg |
11374 |
T |
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| Q |
201 |
ttgttcgaagtaacgataatctgcaagtgtggactgatttaaattggcaagactttgtctatttctaagttgttttggtttt----------ttatgtct |
290 |
Q |
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| T |
11375 |
ttgttcgaagtaacgatactctgcaagtgtggactgatttaaattggcaagactttgtctatttctaagttgttttggtttttttcgtttttttatgtct |
11474 |
T |
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| Q |
291 |
ttagtaatccctatcttcatttagtattttcattatgttttgtctaacaagttgtatttccttcttaattagtagaagtttgttctctattatatgtttg |
390 |
Q |
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| T |
11475 |
ttagtaatccctatcttcatttagtattttcattatgttttgtctaacaagttgtatttccttcttaattagtagaagtttgttctctattatatgttta |
11574 |
T |
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| Q |
391 |
tactggacccattgatgatgaaatgaagagaagcaatggcctttatgtttcatcattgtctcaatttgcattaatatttattcaagcagtagcatataga |
490 |
Q |
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| T |
11575 |
tactggacccattgatgatgaaatgaagagaagcaatggcctttatgtttcatcattgtctcaatttgtattaatatttattcaagcagtagcatataga |
11674 |
T |
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| Q |
491 |
gtaaactggtcgaatttaactcagaatgaacgtgagaattatcta |
535 |
Q |
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| T |
11675 |
gtaaactggtcgaatttaacttagaatgaacgtgagaattttcta |
11719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2888905 - 2888876
Alignment:
| Q |
1 |
ggattttgtgagctcacgcttgatatagcg |
30 |
Q |
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| T |
2888905 |
ggattttgtgagctcacgcttgatatagcg |
2888876 |
T |
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