View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292_low_8 (Length: 518)
Name: NF1292_low_8
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 93 - 511
Target Start/End: Complemental strand, 39242335 - 39241923
Alignment:
| Q |
93 |
gctggtattcccgttatcttgaaatatcccaacaactgattttcttcgtagacaagtatcaatgttgcagtttgattatcataatcataaatagtcgtga |
192 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
39242335 |
gctggtattcccgttatcttgatatatcccaacaactgattttcttcgtagacaagtatcaatgttgcagtttgattatcataa------atagttgtga |
39242242 |
T |
|
| Q |
193 |
taagtagatccttgcgcgcgggaattctagtgttccttggaatcactgggacaaacttgtttccatcagctcgaattccaatggcatgcggtgtggcttg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39242241 |
aaagtagatccttgcgcgcgggaattctagtgttccttggaatcactgggacaaacttgtttccatcagctcgaattccaatggcatgcggtgtggcttg |
39242142 |
T |
|
| Q |
293 |
aatggttaataagtccaagtttccaaatggatcaatgatgcctaaagcagcagctccttctattgctgcaccacaaactgcaccttccaaaggatttatt |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39242141 |
aatggttaataagtccaagtttccaaatggatcaatgatgcctaaagcaacagctccttctattgctgcaccacaaactgcaccttccaaaggatttatt |
39242042 |
T |
|
| Q |
393 |
atacctttataaacttctgttacttcgcatatcttggtaacaagattcctcacccttgggatataagaacatccatcaacaattatcacatcatttacat |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39242041 |
atacctttataaacttctgttacttcgcatatcttggtaacaagattcctcacccttgggatataagaacatccatcaacaattatcacatcatttacat |
39241942 |
T |
|
| Q |
493 |
ccttaacttttacctttgc |
511 |
Q |
| |
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||| ||||||||||||||| |
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| T |
39241941 |
cctcaacttttacctttgc |
39241923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 136 - 511
Target Start/End: Complemental strand, 808643 - 808275
Alignment:
| Q |
136 |
cttcgtagacaagtatcaatgttgcagtttgattatcataatcataaatagtcgtgataagtagatccttgcgcgcgggaattctagtgttccttggaat |
235 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||| | ||||| |||| |||||||||||| ||||| || ||| | |||||||| ||||| |
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| T |
808643 |
cttcgtacacaagtatcaatgcctcagtttgattatcatga------atagttgtgaaaagtagatccttacgcgctggcattgtggtgttcctcggaat |
808550 |
T |
|
| Q |
236 |
cactgggacaaacttgtttccatcagctcgaattccaatggcatgcggtgtggcttgaatggttaataagtccaagtttccaaatggatcaatgatgcct |
335 |
Q |
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|| || ||||||||||| ||||||||||| |||||||||||| | || ||||||||||| ||||| ||||||||||||||||| |||||| |||||||| |
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| T |
808549 |
tacaggtacaaacttgttcccatcagctcggattccaatggcaagaggagtggcttgaatcgttaacaagtccaagtttccaaaaggatcactgatgcct |
808450 |
T |
|
| Q |
336 |
aaagcagcagctccttctattgctgcaccacaaactgcaccttccaaaggatttattatacctttataaacttctgttacttcgcatatcttggtaacaa |
435 |
Q |
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||||| |||||||||| ||||||||||||||||| |||||||||||||| | |||||||||||||||||||||| | || ||||| |||||||||| |
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| T |
808449 |
gaagcaacagctccttccattgctgcaccacaaaccgcaccttccaaagggt---ttatacctttataaacttctgtaattttgcataagttggtaacaa |
808353 |
T |
|
| Q |
436 |
gattcctcaccct--tgggatataagaacatccatcaacaattatcacatcatttacatccttaacttttacctttgc |
511 |
Q |
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||||| |||||| ||||||||| ||||||||| |||||| |||||||||||||| |||| |||| ||||||||| |
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| T |
808352 |
gattctccacccttgtgggatatatgaacatccaccaacaagtatcacatcatttatatccccgacttctacctttgc |
808275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 504
Target Start/End: Complemental strand, 47843289 - 47843145
Alignment:
| Q |
357 |
gctgcaccacaaactgcaccttccaaaggatttattatacctttataaacttctgttacttcgcatatcttggtaacaagattcctcacccttgggatat |
456 |
Q |
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||||||||||||| |||| |||||||||| || ||| |||||||||| ||| || ||| |||||| || |||||||||| | ||||| | || |||| |
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| T |
47843289 |
gctgcaccacaaagtgcagcttccaaagggttcatt---cctttataaagttcctttcctttgcatattttagtaacaagatccttcaccttcggtatat |
47843193 |
T |
|
| Q |
457 |
aagaacatccatcaacaattatcacatcatttacatccttaactttta |
504 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||| | |||||||| |
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| T |
47843192 |
tccaacatccaccaacaattatcacatcatttatatcatcaactttta |
47843145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 44727514 - 44727570
Alignment:
| Q |
222 |
gtgttccttggaatcactgggacaaacttgtttccatcagctcgaattccaatggca |
278 |
Q |
| |
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|||||||||||||| | ||| ||||| ||||||||||||||||||||||| |||||| |
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| T |
44727514 |
gtgttccttggaataattggtacaaatttgtttccatcagctcgaattccgatggca |
44727570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 47879347 - 47879417
Alignment:
| Q |
419 |
gcatatcttggtaacaagattcctcacccttgggatataagaacatccatcaacaattatcacatcattta |
489 |
Q |
| |
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|||||| || |||||||||||| |||||||||| |||| |||||||| |||||||||| |||||||||| |
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| T |
47879347 |
gcatattttagtaacaagattcttcacccttggtatattccaacatccaccaacaattataacatcattta |
47879417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 489
Target Start/End: Original strand, 47845189 - 47845265
Alignment:
| Q |
412 |
ttacttcgcatatcttggtaacaagattcctcacccttgggatataagaacatccatcaacaattatcacatcattta |
489 |
Q |
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|||||| |||||| || |||||||||||| ||||| |||| |||| | |||||||| | ||||||||||||||||||| |
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| T |
47845189 |
ttactttgcatattttagtaacaagattcttcacc-ttggtatattacaacatccacctacaattatcacatcattta |
47845265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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