View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1293-Insertion-1 (Length: 463)

Name: NF1293-Insertion-1
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1293-Insertion-1
NF1293-Insertion-1
[»] chr6 (1 HSPs)
chr6 (44-463)||(27159361-27159780)


Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 44 - 463
Target Start/End: Complemental strand, 27159780 - 27159361
Alignment:
Q  44 tcaatttaattaagagacaaaataaatagtctcagcttttaataagaaaattattaatgatgtaaatttctccttcatgata---tttgattttagtcac 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||| |||   |||||||||||| ||    
T  27159780 tcaatttaattaagagacaaaataaatagtctcagcttttaataagaaaattattaatg--gtagatttctccttcatcataatatttgattttagttac 27159683  T
Q  141 atttattcaccattttctacaatatcacaagttgtaacataactatataaaagcaatcacacctataactgaaaacttgtataatgcaaaaaataaattt 240  Q
    |||||||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27159682 atttattcactattttctactatatcataagttgtaacataactatgtaaaagcaatcacacctataactgaaaacttgtataatgcaaaaaataaattt 27159583  T
Q  241 tagggccatgatttatcataacaacctataaattcctaataatgcagaagaaatttcattagcatgaaaattcacctgtgctatagcttttcctgatgag 340  Q
    ||| |||||||||||| |||| ||||| ||||||||||| |||||| ||||||||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  27159582 tagtgccatgatttattataagaacctctaaattcctaacaatgca-aagaaatttgattagtatgaaaattcacctgagctatagcttttcctgatgag 27159484  T
Q  341 attgcaatgtcttttattattggattgtccataacagcaagtgaaccccacggtgctccattagcacccaaaggggaccatgcactcacatgaatccctt 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27159483 attgcaatgtcttttattattggattgtccataacagcaagtgaaccccacggtgctccattagcacccaaaggggaccatgcactcacatgaatccctt 27159384  T
Q  441 tctctttgcagaaatttctcaga 463  Q
    ||||||||||||| |||||||||    
T  27159383 tctctttgcagaactttctcaga 27159361  T

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