View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1293-Insertion-4 (Length: 629)

Name: NF1293-Insertion-4
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1293-Insertion-4
NF1293-Insertion-4
[»] chr1 (5 HSPs)
chr1 (89-446)||(9174982-9175338)
chr1 (476-629)||(9190234-9190387)
chr1 (8-85)||(9193964-9194045)
chr1 (88-228)||(10983619-10983761)
chr1 (8-55)||(33928363-33928410)
[»] chr3 (2 HSPs)
chr3 (89-228)||(18757963-18758104)
chr3 (8-55)||(32926076-32926123)
[»] scaffold0011 (1 HSPs)
scaffold0011 (493-626)||(140299-140435)
[»] chr5 (1 HSPs)
chr5 (493-626)||(20751425-20751561)
[»] chr7 (2 HSPs)
chr7 (130-227)||(23066795-23066892)
chr7 (88-211)||(2750524-2750649)
[»] chr8 (2 HSPs)
chr8 (86-211)||(3735706-3735833)
chr8 (88-211)||(3735446-3735571)
[»] scaffold0576 (1 HSPs)
scaffold0576 (89-211)||(5908-6032)
[»] chr6 (1 HSPs)
chr6 (89-211)||(15360924-15361048)
[»] chr2 (1 HSPs)
chr2 (130-227)||(25818599-25818696)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 89 - 446
Target Start/End: Complemental strand, 9175338 - 9174982
Alignment:
Q  89 actacgccaaaaagagactttaatagcacttttt-ccctttaaataacacttaaaagtgctattaaagccgcggttattgtaagtataccttttttaata 187  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||   |||||||||||||||||||    
T  9175338 actacaccaaaaagagactttaatagcacttttttccctttaaataacacttaaaagtgctattaaagctgccgttat---aagtataccttttttaata 9175242  T
Q  188 gaatttttaaagtgctatcaaaagctttgtttttaatagcactattccaaaagc--ttttgccaaattaagaactt--gcgctttgaaaatgataatttg 283  Q
    ||| ||||||||||||||||||||||||| ||||| |||   ||||||||||||  | |||    |||| | | ||  ||||||||||| ||||||||||    
T  9175241 gaaattttaaagtgctatcaaaagctttgcttttagtagggttattccaaaagcgctattgt---attatgcatttttgcgctttgaaa-tgataatttg 9175146  T
Q  284 aacagggttgaatagcgttttcctttagaaatgctatcatagaatataactttaatagggttatcatacaaagtgctattaagaggtcaaattcgtatat 383  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9175145 gacagggttgaatagcgttttcctttagaaatgctatcttagaatataactttaatagggttatcatacaaagtgctattaaaaggtcaaattcgtatat 9175046  T
Q  384 acaagctaactatact-aattccagacaaacagtctactcatattatcttaactaaagaaatat 446  Q
    |||||||||||||||| ||||||||||||||| ||| |||||||| ||||||| ||||||||||    
T  9175045 acaagctaactatactcaattccagacaaacaatctgctcatattctcttaaccaaagaaatat 9174982  T

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Target: chr1; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 476 - 629
Target Start/End: Complemental strand, 9190387 - 9190234
Alignment:
Q  476 agtaacaacttcagtttttaacatcaaattcatgattgcatgatgttgccacatttttaacatcgaattttacctctcctatttcgattgcatttgtctt 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||| |||||||||||| |    
T  9190387 agtaacaacttcagtttttaacatcaaattcatgattgcatgatgttcccacatttttatcatcaaattttacctctcctatttccattgcatttgtcgt 9190288  T
Q  576 tgtgaattttttgcacccacgtcacaccagtttagtaactgttttcttacttta 629  Q
    |||||||||||| |||||||||||||||| ||||  ||||||||||||||||||    
T  9190287 tgtgaatttttttcacccacgtcacaccattttaacaactgttttcttacttta 9190234  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 9194045 - 9193964
Alignment:
Q  8 cttatctcggagggatggtattgtctcatta----gagaaataggattggatctagtgtgcaattttttatctgttaggttt 85  Q
    |||||||||||||||||||||||||||||||    ||||||||| ||||||  ||||||||||||||||||||| |||||||    
T  9194045 cttatctcggagggatggtattgtctcattaattagagaaatagaattggagttagtgtgcaattttttatctggtaggttt 9193964  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 10983761 - 10983619
Alignment:
Q  88 cactacgccaaaaagagactttaatagcacttttt---ccctttaaataacacttaaaagtgctattaaagccgcggttattgtaagtatacctttttta 184  Q
    ||||||||||||||  |  ||||||||||||||||   |||||| | || |||| ||| |||||||||||||||| | ||||||||||||||  ||||||    
T  10983761 cactacgccaaaaaagggatttaatagcactttttttgccctttga-tagcactaaaatgtgctattaaagccgccgctattgtaagtatactgttttta 10983663  T
Q  185 atagaatttttaaagtgctatcaaaagctttgtttttaatagca 228  Q
    |||| | |||||||| ||||| |||||| | || ||||||||||    
T  10983662 atagcacttttaaagggctattaaaagcctggtgtttaatagca 10983619  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 33928363 - 33928410
Alignment:
Q  8 cttatctcggagggatggtattgtctcattagagaaataggattggat 55  Q
    ||||||| ||||||||| |||||||||||||||||||| | |||||||    
T  33928363 cttatcttggagggatgatattgtctcattagagaaatggaattggat 33928410  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 89 - 228
Target Start/End: Original strand, 18757963 - 18758104
Alignment:
Q  89 actacgccaaaaagagactttaatagcacttttt---ccctttaaataacacttaaaagtgctattaaagccgcggttattgtaagtataccttttttaa 185  Q
    |||||||||||||  |  ||||||||||||||||   |||||| | || |||| ||||||||||||||||||||   ||||||||||||||| |||||||    
T  18757963 actacgccaaaaaagggatttaatagcactttttttgccctttga-tagcactaaaaagtgctattaaagccgccactattgtaagtataccgtttttaa 18758061  T
Q  186 tagaatttttaaagtgctatcaaaagctttgtttttaatagca 228  Q
    ||| | |||||||| ||||| |||||| | || ||||||||||    
T  18758062 tagcacttttaaagggctattaaaagcctggtgtttaatagca 18758104  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 32926123 - 32926076
Alignment:
Q  8 cttatctcggagggatggtattgtctcattagagaaataggattggat 55  Q
    ||||||||||||||||| |||||||||||| ||||||| | |||||||    
T  32926123 cttatctcggagggatgatattgtctcattggagaaatggaattggat 32926076  T

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Target: scaffold0011 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 493 - 626
Target Start/End: Complemental strand, 140435 - 140299
Alignment:
Q  493 ttaacatcaaattcatgattgcatgatgttgccacatttttaacatcgaattttacctc--tcctatttcgattgcatttgtctttgtgaattttttgca 590  Q
    ||||||||||| |   ||||||||| || |||||||| ||||||||| |||||||||||  |||| |||| ||||| |||| |||||||||||||| |||    
T  140435 ttaacatcaaactgcagattgcatggtgctgccacatctttaacatcaaattttacctctatcctgtttccattgcttttggctttgtgaatttttggca 140336  T
Q  591 cccacgtcacacca-gtttagtaactgttttcttact 626  Q
     ||  ||||||||| |||||| || ||||||||||||    
T  140335 accgagtcacaccacgtttagcaattgttttcttact 140299  T

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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 493 - 626
Target Start/End: Complemental strand, 20751561 - 20751425
Alignment:
Q  493 ttaacatcaaattcatgattgcatgatgttgccacatttttaacatcgaattttacctc--tcctatttcgattgcatttgtctttgtgaattttttgca 590  Q
    ||||||||||| |   ||||||||| ||||||||||| ||||||||| |||||||||||  |||| |||| ||||| |||  |||||||||||||| |||    
T  20751561 ttaacatcaaactgcagattgcatggtgttgccacatctttaacatcaaattttacctctatcctgtttccattgcttttagctttgtgaatttttggca 20751462  T
Q  591 cccacgtcacacca-gtttagtaactgttttcttact 626  Q
     ||  ||||||||| |||||| || ||||||||||||    
T  20751461 accgagtcacaccacgtttagcaattgttttcttact 20751425  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 23066795 - 23066892
Alignment:
Q  130 aataacacttaaaagtgctattaaagccgcggttattgtaagtataccttttttaatagaatttttaaagtgctatcaaaagctttgtttttaatagc 227  Q
    |||| ||||||||||||||||||||  ||| |||||||||| |  | | | |||||||| |||||||| ||||||| |||||| | ||||||||||||    
T  23066795 aatagcacttaaaagtgctattaaacgcgccgttattgtaaatgcatcctctttaatagtatttttaatgtgctattaaaagcctggtttttaatagc 23066892  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 2750524 - 2750649
Alignment:
Q  88 cactacgccaaaaagagactttaatagcactttttcc--ctttaaataacacttaaaagtgctattaaagccgcggttattgtaagtataccttttttaa 185  Q
    ||||||||||||||  |  ||||||||||||||||    |||| |||| ||||||||||||||||| ||||| | | ||||||||| |||| |  ||| |    
T  2750524 cactacgccaaaaaagggatttaatagcacttttttttgcttttaatagcacttaaaagtgctattgaagcctccgctattgtaagcatacttcctttga 2750623  T
Q  186 tagaatttttaaagtgctatcaaaag 211  Q
    ||| | |||||||||||||| |||||    
T  2750624 tagcacttttaaagtgctattaaaag 2750649  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 3735833 - 3735706
Alignment:
Q  86 aacactacgccaaaaagagactttaatagcactttttcc--ctttaaataacacttaaaagtgctattaaagccgcggttattgtaagtatacctttttt 183  Q
    ||||||||||||||||  |  ||||||||||||||||    |||| |||| ||||||||||||||||| ||||| | | ||||||||| |||| |  |||    
T  3735833 aacactacgccaaaaaagggatttaatagcacttttttttgcttttaatagcacttaaaagtgctattgaagcctccgctattgtaagcatacttccttt 3735734  T
Q  184 aatagaatttttaaagtgctatcaaaag 211  Q
     |||| | |||||||||||||| |||||    
T  3735733 gatagcacttttaaagtgctattaaaag 3735706  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 3735571 - 3735446
Alignment:
Q  88 cactacgccaaaaagagactttaatagcactttttcc--ctttaaataacacttaaaagtgctattaaagccgcggttattgtaagtataccttttttaa 185  Q
    ||||||||||||||  |  ||||||||||||||||    |||| |||| ||||||||||||||||| ||||| | | ||||||||| |||| |  ||| |    
T  3735571 cactacgccaaaaaagggatttaatagcacttttttttgcttttaatagcacttaaaagtgctattgaagcctccgctattgtaagcatacttcctttga 3735472  T
Q  186 tagaatttttaaagtgctatcaaaag 211  Q
    ||| | |||||||||||||| |||||    
T  3735471 tagcacttttaaagtgctattaaaag 3735446  T

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Target: scaffold0576 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 6032 - 5908
Alignment:
Q  89 actacgccaaaaagagactttaatagcactttttcc--ctttaaataacacttaaaagtgctattaaagccgcggttattgtaagtataccttttttaat 186  Q
    |||||||||||||  |  ||||||||||||||||    |||| |||| ||||||||||||||||| ||||| | | ||||||||| |||| |  ||| ||    
T  6032 actacgccaaaaaagggatttaatagcacttttttttgcttttaatagcacttaaaagtgctattgaagcctccgctattgtaagcatacttcctttgat 5933  T
Q  187 agaatttttaaagtgctatcaaaag 211  Q
    || | |||||||||||||| |||||    
T  5932 agcacttttaaagtgctattaaaag 5908  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 15361048 - 15360924
Alignment:
Q  89 actacgccaaaaagagactttaatagcactttttcc--ctttaaataacacttaaaagtgctattaaagccgcggttattgtaagtataccttttttaat 186  Q
    |||||||||||||  |  ||||||||||||||||    |||| |||| ||||||||||||||||| ||||| | | ||||||||| |||| |  ||| ||    
T  15361048 actacgccaaaaaagggatttaatagcacttttttttgcttttaatagcacttaaaagtgctattgaagcctccgctattgtaagcatacttcctttgat 15360949  T
Q  187 agaatttttaaagtgctatcaaaag 211  Q
    || | |||||||||||||| |||||    
T  15360948 agcacttttaaagtgctattaaaag 15360924  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 25818696 - 25818599
Alignment:
Q  130 aataacacttaaaagtgctattaaagccgcggttattgtaagtataccttttttaatagaatttttaaagtgctatcaaaagctttgtttttaatagc 227  Q
    |||| ||||||||||||||||||||  ||| | |||||||| | || | | |||||||  | |||||||||||||| |||||| | ||||||||||||    
T  25818696 aatagcacttaaaagtgctattaaacacgccgctattgtaaatgtatcctctttaataacacttttaaagtgctattaaaagcctggtttttaatagc 25818599  T

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