View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1293-Insertion-5 (Length: 720)
Name: NF1293-Insertion-5
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293-Insertion-5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 681; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 8 - 716
Target Start/End: Complemental strand, 17030715 - 17030007
Alignment:
| Q |
8 |
gggaactaagattgttgataaacaccttattttaaacgtcggagcttgtgtaattgtcaatcattacacattcaatttgtgcaatctttctgtaatcttc |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17030715 |
gggaactaagattgttgataaacgccttattttaaacgtcggagcttgtgtaattgtcaatcattacacattcaatttgtgcaatctttctgtaatcttc |
17030616 |
T |
|
| Q |
108 |
gccatttggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggcagaccctcctttggcaagcattgg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17030615 |
gccatttggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggaagaccctcctttggcaagcattgg |
17030516 |
T |
|
| Q |
208 |
atgttgggacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacagatattta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17030515 |
atgttgggacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacggatattta |
17030416 |
T |
|
| Q |
308 |
gataagtaagagagaggggaagcaacccttgattaggaaaagactccacatctgcttcttgaatatacatggtaaagagcgatgtattggttgacaaagc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17030415 |
gataagtaagagagaggggaagcaacccttgattaggaaaagactccacatctgcttcttgaatatacatggtaaagagcgatgtattggttgacaaagc |
17030316 |
T |
|
| Q |
408 |
acatttcaatgagttgataagaagttttgagcatttcacaagaaagaggtttcttaggcttgatggcaaacctccatcggagaacgactccaactgtgga |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17030315 |
acatttcaatgagttgataagaagttttgagcatttcacaagaaagaggtttcttaggcttgatggcaaacctccatcggagaacgactccaactgtgga |
17030216 |
T |
|
| Q |
508 |
caatcatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgtcgca |
607 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17030215 |
caattatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgca |
17030116 |
T |
|
| Q |
608 |
gccttggtgtagacaatcctccttttggaaatgattcaaatttaggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaat |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17030115 |
gccttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaat |
17030016 |
T |
|
| Q |
708 |
catttcaaa |
716 |
Q |
| |
|
||||||||| |
|
|
| T |
17030015 |
catttcaaa |
17030007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 8 - 716
Target Start/End: Complemental strand, 17049053 - 17048345
Alignment:
| Q |
8 |
gggaactaagattgttgataaacaccttattttaaacgtcggagcttgtgtaattgtcaatcattacacattcaatttgtgcaatctttctgtaatcttc |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17049053 |
gggaactaagattgttgataaacgccttattttaaacgtcggagcttgtgtaattgtcaatcattacacattcaatttgtgcaatctttctgtaatcttc |
17048954 |
T |
|
| Q |
108 |
gccatttggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggcagaccctcctttggcaagcattgg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17048953 |
gccatttggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggaagaccctcctttggcaagcattgg |
17048854 |
T |
|
| Q |
208 |
atgttgggacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacagatattta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17048853 |
atgttgggacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacggatattta |
17048754 |
T |
|
| Q |
308 |
gataagtaagagagaggggaagcaacccttgattaggaaaagactccacatctgcttcttgaatatacatggtaaagagcgatgtattggttgacaaagc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17048753 |
gataagtaagagagaggggaagcaacccttgattaggaaaagactccacatctgcttcttgaatatacatggtaaagagcgatgtattggttgacaaagc |
17048654 |
T |
|
| Q |
408 |
acatttcaatgagttgataagaagttttgagcatttcacaagaaagaggtttcttaggcttgatggcaaacctccatcggagaacgactccaactgtgga |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17048653 |
acatttcaatgagttgataagaagttttgagcatttcacaagaaagaggtttcttaggcttgatggcaaacctccatcggagaacgactccaactgtgga |
17048554 |
T |
|
| Q |
508 |
caatcatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgtcgca |
607 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17048553 |
caattatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgca |
17048454 |
T |
|
| Q |
608 |
gccttggtgtagacaatcctccttttggaaatgattcaaatttaggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaat |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17048453 |
gccttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaat |
17048354 |
T |
|
| Q |
708 |
catttcaaa |
716 |
Q |
| |
|
||||||||| |
|
|
| T |
17048353 |
catttcaaa |
17048345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 8 - 716
Target Start/End: Complemental strand, 16978843 - 16978135
Alignment:
| Q |
8 |
gggaactaagattgttgataaacaccttattttaaacgtcggagcttgtgtaattgtcaatcattacacattcaatttgtgcaatctttctgtaatcttc |
107 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16978843 |
gggaactaagattgttggtaaacgccttattttaaacgtcggagcttgtgtaattgtcaatcattacacattcaatttgtgcaatctttctgtaatcttc |
16978744 |
T |
|
| Q |
108 |
gccatttggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggcagaccctcctttggcaagcattgg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16978743 |
gccatttggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggcagaccctcctttggcaagcattgg |
16978644 |
T |
|
| Q |
208 |
atgttgggacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacagatattta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16978643 |
atgttgggacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacaaatattta |
16978544 |
T |
|
| Q |
308 |
gataagtaagagagaggggaagcaacccttgattaggaaaagactccacatctgcttcttgaatatacatggtaaagagcgatgtattggttgacaaagc |
407 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||| || |||| ||||||||||| | |||||| |
|
|
| T |
16978543 |
gataagtaagagagataggaagcaacccttgattaggaaaaaactccacatctaattcttgaatatacatgttagagagagatgtattggtcggcaaagc |
16978444 |
T |
|
| Q |
408 |
acatttcaatgagttgataagaagttttgagcatttcacaagaaagaggtttcttaggcttgatggcaaacctccatcggagaacgactccaactgtgga |
507 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16978443 |
ccatttcagcgagttgataagaagttttgagcatttcacaagaaagaggtttcttaggcttgatggcaaacctccatcggagaacgactccaactgtgga |
16978344 |
T |
|
| Q |
508 |
caatcatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgtcgca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16978343 |
caatcatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgca |
16978244 |
T |
|
| Q |
608 |
gccttggtgtagacaatcctccttttggaaatgattcaaatttaggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaat |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16978243 |
gccttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaat |
16978144 |
T |
|
| Q |
708 |
catttcaaa |
716 |
Q |
| |
|
||||||||| |
|
|
| T |
16978143 |
catttcaaa |
16978135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 115 - 713
Target Start/End: Complemental strand, 17110068 - 17109470
Alignment:
| Q |
115 |
ggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggcagaccctcctttggcaagcattggatgttgg |
214 |
Q |
| |
|
||||||||||||| || | ||| | || ||| |||||| | || |||| |||||| |||||| |||| ||||||||||| || || | || ||||||| |
|
|
| T |
17110068 |
ggtttcttgcatctttctaaaaggaatggacagttccccgaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgg |
17109969 |
T |
|
| Q |
215 |
gacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacagatatttagataagt |
314 |
Q |
| |
|
|||| || || ||| | |||| | ||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
17109968 |
gacagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggt |
17109869 |
T |
|
| Q |
315 |
aagagagaggggaagcaacccttgattaggaaaagactccacatctgcttcttgaatatacatggtaaagagcgatgtattggttgacaaagcacatttc |
414 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||||||||||||||||| |||||| ||||||||| | |||| |||||||| | || || || |||||| |
|
|
| T |
17109868 |
aagagagagtggaatcaacccttgattgggaaaagactccacatctgtttcttggatatacatgtaacagagagatgtatttgctggaaacgcccatttc |
17109769 |
T |
|
| Q |
415 |
aatgagttgataagaagttttgagcatttcacaagaaagaggtttcttaggcttgatggcaaacctccatcggagaacgactccaactgtggacaatcat |
514 |
Q |
| |
|
| |||||||| ||||| || || ||||| | |||| |||| || ||| ||||| |||||||||| | ||||||| ||| |||| ||||||||||||| |
|
|
| T |
17109768 |
agggagttgatgagaaggttggaacatttaatgagaaggaggctttttatacttgaaggcaaacctctagcggagaaggacaccaattgtggacaatcat |
17109669 |
T |
|
| Q |
515 |
ctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgtcgcagccttgg |
614 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||| | ||| ||||| |||| || ||| || | ||||| || |
|
|
| T |
17109668 |
ttatagacagcttatagagagatggaaggaggatatgcatgcattcaggaagtgattttaactcctctaattttgaaagataaaactgctgaagcctggg |
17109569 |
T |
|
| Q |
615 |
tgtagacaatcctccttttggaaatgattcaaatttaggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaatcatttc |
713 |
Q |
| |
|
|| |||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17109568 |
tgcagacaatcctccatttggaaatgatgcaaatttaggacactcttcaattaagagagatgtgagtttaagatgttcattttcctgtgaaatcatttc |
17109470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 516 - 716
Target Start/End: Complemental strand, 17024547 - 17024342
Alignment:
| Q |
516 |
tatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgatttta-----aattctccaatttggaaatatcaaagtgtcgcagcc |
610 |
Q |
| |
|
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||| | | | |
|
|
| T |
17024547 |
tatagataggttatgaagagatggaaagaagatatgcatgcatttaggaagtgattttaaattgaattctcctatttgaaaatattaaagtgttgtaaac |
17024448 |
T |
|
| Q |
611 |
ttggtgtagacaatcctccttttggaaatgattcaaatttaggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaatcat |
710 |
Q |
| |
|
|||| | |||| ||||| | || || |||| | |||| | |||||||| | |||||||||| | | ||| ||||||| |||||||||| ||| |||| |
|
|
| T |
17024447 |
ttggagcagacgatccttccttgggtaatgttccaaaataaggacacttcctaattgagagatatttaagtataagatgttcattttcctaggaattcat |
17024348 |
T |
|
| Q |
711 |
ttcaaa |
716 |
Q |
| |
|
|||||| |
|
|
| T |
17024347 |
ttcaaa |
17024342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 516 - 716
Target Start/End: Complemental strand, 17035309 - 17035104
Alignment:
| Q |
516 |
tatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgatttta-----aattctccaatttggaaatatcaaagtgtcgcagcc |
610 |
Q |
| |
|
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||| | | | |
|
|
| T |
17035309 |
tatagataggttatgaagagatggaaagaagatatgcatgcatttaggaagtgattttaaattgaattctcctatttgaaaatattaaagtgttgtaaac |
17035210 |
T |
|
| Q |
611 |
ttggtgtagacaatcctccttttggaaatgattcaaatttaggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaatcat |
710 |
Q |
| |
|
|||| | |||| ||||| | || || |||| | |||| | |||||||| | |||||||||| | | ||| ||||||| |||||||||| ||| |||| |
|
|
| T |
17035209 |
ttggagcagacgatccttccttgggtaatgttccaaaataaggacacttcctaattgagagatatttaagtataagatgttcattttcctaggaattcat |
17035110 |
T |
|
| Q |
711 |
ttcaaa |
716 |
Q |
| |
|
|||||| |
|
|
| T |
17035109 |
ttcaaa |
17035104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 437 - 524
Target Start/End: Complemental strand, 17035426 - 17035340
Alignment:
| Q |
437 |
agcatttcacaagaaagaggtttcttaggcttgatggcaaacctccatcggagaacgactccaactgtggacaatcatctatagatag |
524 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| | ||||||||||||||| ||||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
17035426 |
agcatttcacgagaaaaaggtttcttaggct-gttggcaaacctccatccgagaacgactccagttgtggataatcaaatatagatag |
17035340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 437 - 524
Target Start/End: Complemental strand, 17089937 - 17089851
Alignment:
| Q |
437 |
agcatttcacaagaaagaggtttcttaggcttgatggcaaacctccatcggagaacgactccaactgtggacaatcatctatagatag |
524 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| | ||||||||||||||| ||||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
17089937 |
agcatttcacgagaaaaaggtttcttaggct-gttggcaaacctccatccgagaacgactccagttgtggataatcaaatatagatag |
17089851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 516 - 578
Target Start/End: Complemental strand, 17089819 - 17089757
Alignment:
| Q |
516 |
tatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaatt |
578 |
Q |
| |
|
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
17089819 |
tatagataggttatgaagagatggaaagaagatatgcatgcatttaggaagtgattttaaatt |
17089757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 14299065 - 14299017
Alignment:
| Q |
157 |
atttgtagagttgaaatggatttaggcagaccctcctttggcaagcatt |
205 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
14299065 |
atttgtagagttgaaatggatttgggcagaccctcctttggtaagcatt |
14299017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 14314010 - 14313962
Alignment:
| Q |
311 |
aagtaagagagaggggaagcaacccttgattaggaaaagactccacatc |
359 |
Q |
| |
|
||||||||||| | |||||||||||||||| ||||||||||||||||| |
|
|
| T |
14314010 |
aagtaagagagcgtggaagcaacccttgatcgggaaaagactccacatc |
14313962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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