View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12930_high_1 (Length: 925)
Name: NF12930_high_1
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 817; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 817; E-Value: 0
Query Start/End: Original strand, 13 - 906
Target Start/End: Original strand, 37059403 - 37060298
Alignment:
| Q |
13 |
aatatccttagattgaatattttactaactaaacttaaacttactgcgaacaatatctcataccaaatagtcattaacattgtcaaaggtttttccaaat |
112 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37059403 |
aatatccttagattgaatgttttactaactaaacttaaacttactgcgaacaatatctcataccaaatagtcattaacattgtcaaaggtttttccaaat |
37059502 |
T |
|
| Q |
113 |
caagcttgaaacttgaaagcaacatcacccttcttcttagacttctatataccgtgaacaatttcttgtaaataataacattgtcagaggt--accgttg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37059503 |
caagcttgaaacttgaaagcaacatcacccttcttcttagacttctatataccgtgaacaatttcttgtaaataataacattgtcagaggtgtaccgttg |
37059602 |
T |
|
| Q |
211 |
attcaaaatattttgtccacaacaaatgaattcaacgagcaatctaggatacgagttaaatccgtaaaaggagttcttaattgacggttttacgtgtaac |
310 |
Q |
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|||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37059603 |
attcaaaatagtttctccacaacaaatgaattgaacgaacaatctaggatacgagttaaatccgtaaaaggagttcttaattgacggttttacgtgtaac |
37059702 |
T |
|
| Q |
311 |
atgctttaagttatagatcatagaaacatgcgggattttttaatatgtaaggagggaaaagatacaatgcacaaaggtttacaatgcatcgatcatagaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37059703 |
atgctttaagttatagatcatagaaacatgcgggattttttaatatgtaaggagggaaaagatacaatgcacaaaggtttacaatgcatcgatcatagaa |
37059802 |
T |
|
| Q |
411 |
acatgagggattttttaatattgtatcgatgatgcaaaaacaattgaaataactaactattaaaatgcatgtacatcaagtgtcctctaaattccaagag |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
37059803 |
acatgagggattttttaatattgtatcgatgatgcaaaaacaattgaaataactaactattacaatgcatgtacatcaagtgtcctctaaattccgagag |
37059902 |
T |
|
| Q |
511 |
agacttatttttataacttcattgatctataatttctcttgtgtaacttctcttttgaatttgaatccttggcgcctacggattgggtaactgttgctct |
610 |
Q |
| |
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| || ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37059903 |
acttttttttttataacttcattgatgtataatttctcttgtgtaacttttcttttgaatttgaatccttggcgcctacggattgggtaactgttgctct |
37060002 |
T |
|
| Q |
611 |
tgaaacttcttgagcaatctttaagtgacagttttcggaggttacgtcattttaacctttagaaattacagttatcttcaacaatttattgtagcttcct |
710 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37060003 |
tgaaacttcttgagcaatctttaagtgacagttttcggaggttacatcattttaacctttagaaataacagttatcttcaacaatttattgtagcttcct |
37060102 |
T |
|
| Q |
711 |
tgatacgtttgattccaaatcatttctccactcgaagtatgtttcgcttgaaacataaatttgattttttagtgtaacatgtacccttacaataatgata |
810 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37060103 |
tgatacgtttgattccaaatcatttctccattcgaagtatgtttcgcttgaaacataaatttgattttttagtgtaacatgtacccttacaataatgata |
37060202 |
T |
|
| Q |
811 |
gggaccaataatggagtcaatgagaggacaaaggcagttaacaaggactttggtaataattttgtagactaagttgcaagtgcctatgggaaggtc |
906 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37060203 |
gggaccaataatggagtcaatgagaggacgaaggcagttaacaaggactttggtaataattttgtagactaagttgcaagtgcctatgggaaggtc |
37060298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 336
Target Start/End: Original strand, 30638859 - 30638988
Alignment:
| Q |
207 |
gttgattcaaaatattttgtccacaacaaatgaattcaacgagcaatctaggatacgagttaaatccgtaaaaggagttcttaattgacggttttacgtg |
306 |
Q |
| |
|
||||||| |||||| ||| | |||||||||| || || ||||||||||||||||| ||||||||| ||||| | ||||||| ||||| |||| ||| |
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| T |
30638859 |
gttgatttaaaatagtttcttcacaacaaataaactcggcgagcaatctaggatacaagttaaatctttaaaaagggttcttagttgacaagtttatgtg |
30638958 |
T |
|
| Q |
307 |
taacatgctttaagttatagatcatagaaa |
336 |
Q |
| |
|
||||| |||||||||| |||||| ||||| |
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|
| T |
30638959 |
taacaagctttaagttggagatcaaagaaa |
30638988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 1914113 - 1914233
Alignment:
| Q |
208 |
ttgattcaaaatattttgtccacaacaaatgaattcaacgagcaatctaggatacgagttaaatccgtaaaaggagttcttaattgacggttttacgtgt |
307 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||||| | ||||||||| ||| | ||||||||||| | |||||| |||| ||| |||| | ||||||||| |
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| T |
1914113 |
ttgattcgaaatagtttctccacaacaaatgaactggacgagcaatttagaacacgagttaaattcttaaaagaagttattagttgataggtttacgtgt |
1914212 |
T |
|
| Q |
308 |
aacatgctttaagttatagat |
328 |
Q |
| |
|
| || || ||||||| ||||| |
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|
| T |
1914213 |
atcaagccttaagttgtagat |
1914233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 841 - 889
Target Start/End: Original strand, 23620992 - 23621040
Alignment:
| Q |
841 |
aaggcagttaacaaggactttggtaataattttgtagactaagttgcaa |
889 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| || ||||||| |
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| T |
23620992 |
aaggcagtggacaaggactttggtaataattttgtagattatgttgcaa |
23621040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 5473676 - 5473610
Alignment:
| Q |
207 |
gttgattcaaaatattttgtccacaacaaatgaattcaacgagcaatctaggatacgagttaaatcc |
273 |
Q |
| |
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||||||| ||||||||| ||||||||||| || |||| ||||||||||||||| |||||||||| |
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|
| T |
5473676 |
gttgatttgaaatattttctccacaacaaacaaactcaaaaagcaatctaggatacaagttaaatcc |
5473610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 311
Target Start/End: Complemental strand, 15966998 - 15966893
Alignment:
| Q |
207 |
gttgattcaaaatattttgtccacaacaaatgaattcaacgagcaatctaggatacgagttaaatccgtaaaaggagttc-ttaattgacggttttacgt |
305 |
Q |
| |
|
|||||||| ||| | ||| || |||| ||||||| | ||||| |||||||||||| | |||||||| ||||||| ||| ||||||||| | ||||||| |
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|
| T |
15966998 |
gttgattcgaaaaaatttctcaacaaaaaatgaacttgacgagaaatctaggatacaaattaaatccttaaaagggattctttaattgacaggtttacgt |
15966899 |
T |
|
| Q |
306 |
gtaaca |
311 |
Q |
| |
|
|||||| |
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|
| T |
15966898 |
gtaaca |
15966893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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