View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12930_high_10 (Length: 452)
Name: NF12930_high_10
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Original strand, 20505598 - 20506011
Alignment:
| Q |
17 |
aagaagcctgattgtgttgaatcatcaaaatggttgatatttattgataatgttattaataaattttttgttggtattggtggtccagaaaactatcctg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |
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| T |
20505598 |
aagaagcctgattgtgttgaatcatcaaaatggttgatatttattgataatgttattaatatattttgtgttggtattggtggtcgagaaaactatcctg |
20505697 |
T |
|
| Q |
117 |
gtatgcaaatagtgaatggaacatttaatattcaaaaatatggtcttagttataagtttgtattttgtgttgatggatcttctagtttttgttcaaatat |
216 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20505698 |
gtatgcaaatagtgaatgga-catttaacattcaaaaatatggtcttagttataagtttgtattttgtgttgatggatcttctagtttttgttcaaatat |
20505796 |
T |
|
| Q |
217 |
tgggttttataataatggttaagttggaggacgtttgattttgacggaccaacaagtttctgcttttgtattttctgagacctttaattcttatgaagat |
316 |
Q |
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||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20505797 |
tgg-----------atggtgaagttggaggacgtttgattttgactgaccaacaaatttctgcttttgtattttctgagactgttaattcttatgaagat |
20505885 |
T |
|
| Q |
317 |
ggaattattaagtcttttgcttgaatttttacattgctagtgaacttgattatgtaacttaagttcttgttttaataaattctgtgtttttactatgtaa |
416 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20505886 |
ggaattattaagtctgttgcttgaatttttacattgctagtgaacttgattatgtaacttaagttcttgttttgataaattctgtgtttttactatgtaa |
20505985 |
T |
|
| Q |
417 |
gtatgtaataagttgaataatatatt |
442 |
Q |
| |
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| |||||||||||||||||||||||| |
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| T |
20505986 |
gcatgtaataagttgaataatatatt |
20506011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 20517633 - 20517759
Alignment:
| Q |
28 |
ttgtgttgaatcatcaaaatggttgatatttattgataatgttatt---aataaattttttgttggtattggtggtccagaaaactatcct---ggtatg |
121 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||| | || |||| |||||||||||||||||||| |||||||||||| |||| |
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| T |
20517633 |
ttgtgttgaatcatcaaaatggttgatatttgttgataatgttaataacaacaaatcatttgttggtattggtggtcctgaaaactatcctcaaggtaca |
20517732 |
T |
|
| Q |
122 |
caaatagtgaatggaacatttaatatt |
148 |
Q |
| |
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|||||| ||||||||| |||||||||| |
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| T |
20517733 |
caaatattgaatggaaaatttaatatt |
20517759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 20475794 - 20475895
Alignment:
| Q |
17 |
aagaagcctgattgtgttgaatcatcaaaatggttgatatttattgataatgttattaataaattttttgttggtattggtggtccagaaaactatcctg |
116 |
Q |
| |
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||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||||| | ||| || |||||||||||||||||| ||||| ||||||| |
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| T |
20475794 |
aagaagcctaattgcgttgaatcatcaaaatggttgatatttgttgatagtgttattcaaaaagcttgtgttggtattggtggtcctgaaaattatcctg |
20475893 |
T |
|
| Q |
117 |
gt |
118 |
Q |
| |
|
|| |
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|
| T |
20475894 |
gt |
20475895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 20493620 - 20493742
Alignment:
| Q |
28 |
ttgtgttgaatcatcaaaatggttgatatttattgataatgttattaataaattttttgttggtattggtggtccagaaaactatcctggtatgcaaata |
127 |
Q |
| |
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||||| || |||| |||||||||| |||||| |||||||||||||| ||| || | |||||||||||||||| ||||| ||||||||| |||||| | |
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| T |
20493620 |
ttgtgctgcatcaacaaaatggttaatatttgttgataatgttattggaaaagcttgtattggtattggtggtcctgaaaattatcctggtgtgcaaaca |
20493719 |
T |
|
| Q |
128 |
gtgaatggaacatttaatattca |
150 |
Q |
| |
|
|||| |||| |||||||||||| |
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| T |
20493720 |
ttgaagggaaaatttaatattca |
20493742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 2917045 - 2917092
Alignment:
| Q |
17 |
aagaagcctgattgtgttgaatcatcaaaatggttgatatttattgat |
64 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||| ||||| |
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| T |
2917045 |
aagaagcctgattgtgctgaatcatcaaaatggttgatgtttcttgat |
2917092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 20476090 - 20476126
Alignment:
| Q |
304 |
ttcttatgaagatggaattattaagtcttttgcttga |
340 |
Q |
| |
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||||||||||| |||||||||||||||| |||||||| |
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| T |
20476090 |
ttcttatgaagctggaattattaagtctgttgcttga |
20476126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 24555089 - 24555125
Alignment:
| Q |
82 |
ttttgttggtattggtggtccagaaaactatcctggt |
118 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||| |
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| T |
24555089 |
ttttgttggtattggtggtcctgcaaactatcctggt |
24555125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 13072350 - 13072234
Alignment:
| Q |
19 |
gaagcctgattgtgttgaatcatcaaaatggttgatatttattgataatgttattaataaattttttgttggtattggtggtccagaaaactatcctggt |
118 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||| | |||| || |||||||||||||||||||||||||||||||||| |
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| T |
13072350 |
gaagcctgattgtgttgaatcttcaaaatggttgatatttgttgataatgttattcaaaaatcttgtgttggtattggtggtccagaaaactatcctggt |
13072251 |
T |
|
| Q |
119 |
atgcaaatagtgaatgg |
135 |
Q |
| |
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||||||||| ||||||| |
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| T |
13072250 |
atgcaaatattgaatgg |
13072234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 13072191 - 13072097
Alignment:
| Q |
166 |
ttataagtttgtattttgtgttgatggatcttctagtttttgttcaaatattgggttttataataatggttaagttggaggacgtttgattttga |
260 |
Q |
| |
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|||||||||||| ||||||||| |||||||| ||| | |||||| ||||||||| |||||| | |||| | | |||||||| |||||||||| |
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| T |
13072191 |
ttataagtttgtgttttgtgttaatggatctactactaattgttcggatattgggtattataagattggtgagatgggaggacgattgattttga |
13072097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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