View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12930_high_13 (Length: 380)

Name: NF12930_high_13
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12930_high_13
NF12930_high_13
[»] chr4 (3 HSPs)
chr4 (167-363)||(26991865-26992064)
chr4 (256-364)||(26997154-26997262)
chr4 (256-363)||(20275866-20275973)
[»] chr5 (3 HSPs)
chr5 (255-363)||(19783328-19783436)
chr5 (256-363)||(19780081-19780188)
chr5 (256-363)||(19479572-19479677)
[»] chr1 (2 HSPs)
chr1 (256-363)||(40274487-40274595)
chr1 (256-363)||(40279276-40279383)
[»] chr3 (3 HSPs)
chr3 (259-356)||(16221559-16221656)
chr3 (256-353)||(39872827-39872924)
chr3 (256-353)||(39875721-39875818)
[»] chr7 (2 HSPs)
chr7 (256-363)||(39865380-39865485)
chr7 (258-305)||(33190462-33190509)
[»] chr2 (1 HSPs)
chr2 (322-363)||(34111066-34111107)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 167 - 363
Target Start/End: Original strand, 26991865 - 26992064
Alignment:
Q  167 cgagtggtctgtaacgtggaatccgcgggaaagataaccaaatgtcgggagnnnnnnnn-aattaaaaaatatcatataaactacgaatatgttatgaaa 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| |||| | |||||||||||||||    
T  26991865 cgagtggtctgtaacgtggaatccgcgggaaagataaccaaatgtcgggagtttttttttaattaaaaaatatcataaaaacaatgaatatgttatgaaa 26991964  T
Q  266 taatgacttactggatgtccattcttaagtct--tccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaatagttagtg 363  Q
    ||||||| || ||||||| |||||||||||||  ||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  26991965 taatgacctagtggatgttcattcttaagtctcttccaccttgctataactcccactttccaccttcctataaatctcattagtaagtgaatagttagtg 26992064  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 256 - 364
Target Start/End: Original strand, 26997154 - 26997262
Alignment:
Q  256 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaat 355  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26997154 tgttatgaaataatgacttagtggatgttcatccttaagtcttccaccttgctataactcccactttccaccttcctataactctcattagtaagtgaat 26997253  T
Q  356 agttagtga 364  Q
    ||| |||||    
T  26997254 agtcagtga 26997262  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 256 - 363
Target Start/End: Original strand, 20275866 - 20275973
Alignment:
Q  256 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaat 355  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||  |||||||| || |||||||||||||||||||| |||||||||||||||    
T  20275866 tgttatgaaataatgacttagtggatgtccatccttaagtcttccaccttcctataactctcattttccaccttcctataacttccattagtaagtgaat 20275965  T
Q  356 agttagtg 363  Q
    ||||||||    
T  20275966 agttagtg 20275973  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 255 - 363
Target Start/End: Complemental strand, 19783436 - 19783328
Alignment:
Q  255 atgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaa 354  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||  |||||||| || |||| |||||||||||||| |||||||||||||||    
T  19783436 atgttatgaaataatgacttagtggatgtccatccttaagtcttccacctttctataactctcattttctaccttcctataactctcattagtaagtgaa 19783337  T
Q  355 tagttagtg 363  Q
    |||||||||    
T  19783336 tagttagtg 19783328  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 256 - 363
Target Start/End: Complemental strand, 19780188 - 19780081
Alignment:
Q  256 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaat 355  Q
    |||||||||||||||||||| | ||||||||| ||||||||| |||||||  ||||||||||| |||| |||||||||||||| ||||||||||||||||    
T  19780188 tgttatgaaataatgacttagttgatgtccatccttaagtctcccaccttcctataactcccattttctaccttcctataactctcattagtaagtgaat 19780089  T
Q  356 agttagtg 363  Q
    ||||||||    
T  19780088 agttagtg 19780081  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 363
Target Start/End: Complemental strand, 19479677 - 19479572
Alignment:
Q  256 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaat 355  Q
    |||||||||||||||||||  |||||||  || |||||||||| ||||||  ||||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  19479677 tgttatgaaataatgactttgtggatgt--atccttaagtctttcaccttcctataacttccattttccaccttcctataactctcattagtaagtgaat 19479580  T
Q  356 agttagtg 363  Q
    ||||||||    
T  19479579 agttagtg 19479572  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 363
Target Start/End: Complemental strand, 40274595 - 40274487
Alignment:
Q  256 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtg-aa 354  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||| ||| ||||||| |||||||  |||||||||||| ||    
T  40274595 tgttatgaaataatgacttagtggatgtccatccttaagtcttccaccttattataacttccatttttcaccttcttataactcccattagtaagtgaaa 40274496  T
Q  355 tagttagtg 363  Q
    |||||||||    
T  40274495 tagttagtg 40274487  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 256 - 363
Target Start/End: Complemental strand, 40279383 - 40279276
Alignment:
Q  256 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaat 355  Q
    |||||||||||||||| |   ||||||||||| |||||||||||||||||  ||||||| ||| |||||||||||||||||||  |||||||||||||||    
T  40279383 tgttatgaaataatgattcggtggatgtccatccttaagtcttccaccttactataacttccattttccaccttcctataactcccattagtaagtgaat 40279284  T
Q  356 agttagtg 363  Q
    ||||||||    
T  40279283 agttagtg 40279276  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 259 - 356
Target Start/End: Original strand, 16221559 - 16221656
Alignment:
Q  259 tatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaata 356  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| ||  ||||||| ||| |||||||||||||||||||  ||||||||||||||||    
T  16221559 tatgaaataatgacttagtggatgtccatccttaagtcttccactttcctataacttccattttccaccttcctataactcccattagtaagtgaata 16221656  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 353
Target Start/End: Original strand, 39872827 - 39872924
Alignment:
Q  256 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtga 353  Q
    |||||||||||||||||||| ||||||||||||||| |  ||||||||||  |||||| |||| |||| |||||||||||||||||||||||||||||    
T  39872827 tgttatgaaataatgacttagtggatgtccattctttaaccttccaccttcctataacacccattttctaccttcctataactttcattagtaagtga 39872924  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 256 - 353
Target Start/End: Original strand, 39875721 - 39875818
Alignment:
Q  256 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtga 353  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||||||||  ||||||||||| |||| |||||||||||| | |||| |||||||||    
T  39875721 tgttatgaaataatgacttagtggctgtccattctttagtcttccaccttcctataactcccattttctaccttcctataattctcatcagtaagtga 39875818  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 363
Target Start/End: Original strand, 39865380 - 39865485
Alignment:
Q  256 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaat 355  Q
    |||||||||||||||||||| ||||||||||| |||||||||| ||||||  |||||||   | |||| ||||| |||||||  ||||||||||||||||    
T  39865380 tgttatgaaataatgacttagtggatgtccatccttaagtctttcaccttcctataactttaattttctacctttctataac--tcattagtaagtgaat 39865477  T
Q  356 agttagtg 363  Q
    ||||||||    
T  39865478 agttagtg 39865485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 33190509 - 33190462
Alignment:
Q  258 ttatgaaataatgacttactggatgtccattcttaagtcttccacctt 305  Q
    |||||||||||||||||| ||||||| ||| |||||||||| ||||||    
T  33190509 ttatgaaataatgacttagtggatgtacatccttaagtctttcacctt 33190462  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 363
Target Start/End: Complemental strand, 34111107 - 34111066
Alignment:
Q  322 tccaccttcctataactttcattagtaagtgaatagttagtg 363  Q
    |||||||||||||||||  ||||||| |||||||||||||||    
T  34111107 tccaccttcctataactcgcattagtgagtgaatagttagtg 34111066  T

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