View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12930_high_15 (Length: 352)

Name: NF12930_high_15
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12930_high_15
NF12930_high_15
[»] chr7 (13 HSPs)
chr7 (11-335)||(11820422-11820746)
chr7 (34-273)||(11810870-11811109)
chr7 (11-270)||(11809236-11809495)
chr7 (11-134)||(11812604-11812726)
chr7 (11-273)||(11814353-11814616)
chr7 (66-262)||(27993901-27994101)
chr7 (29-153)||(11816926-11817050)
chr7 (12-273)||(11815474-11815727)
chr7 (66-272)||(9729832-9730035)
chr7 (72-253)||(48598314-48598495)
chr7 (296-330)||(11809176-11809210)
chr7 (226-264)||(11812533-11812571)
chr7 (66-208)||(32716533-32716676)
[»] chr1 (11 HSPs)
chr1 (50-255)||(3387638-3387844)
chr1 (9-270)||(16426367-16426637)
chr1 (66-273)||(50127116-50127323)
chr1 (51-272)||(3954934-3955155)
chr1 (66-232)||(48632578-48632746)
chr1 (66-166)||(9149060-9149161)
chr1 (66-115)||(125176-125225)
chr1 (66-166)||(7021634-7021735)
chr1 (67-166)||(18476506-18476607)
chr1 (66-166)||(23431866-23431967)
chr1 (175-232)||(126360-126419)
[»] chr2 (15 HSPs)
chr2 (66-272)||(17651258-17651465)
chr2 (12-115)||(41848957-41849067)
chr2 (71-228)||(44649966-44650126)
chr2 (85-270)||(4748037-4748224)
chr2 (67-166)||(9929631-9929731)
chr2 (189-273)||(18724691-18724775)
chr2 (67-166)||(26576061-26576161)
chr2 (67-166)||(32200885-32200985)
chr2 (84-166)||(13037325-13037408)
chr2 (11-52)||(18724895-18724936)
chr2 (67-163)||(34409647-34409743)
chr2 (14-165)||(38783673-38783832)
chr2 (55-115)||(16661291-16661351)
chr2 (67-164)||(27004035-27004133)
chr2 (176-232)||(34409577-34409633)
[»] chr8 (13 HSPs)
chr8 (50-255)||(18393524-18393730)
chr8 (56-240)||(27401812-27401997)
chr8 (50-273)||(13097427-13097645)
chr8 (79-270)||(2889699-2889884)
chr8 (94-267)||(1226083-1226258)
chr8 (76-270)||(2875344-2875532)
chr8 (78-270)||(3159842-3160028)
chr8 (11-115)||(28867225-28867336)
chr8 (84-166)||(3145256-3145339)
chr8 (76-166)||(2796200-2796294)
chr8 (23-115)||(28869800-28869899)
chr8 (66-166)||(15850518-15850619)
chr8 (87-166)||(28421061-28421141)
[»] scaffold0012 (1 HSPs)
scaffold0012 (50-273)||(209174-209396)
[»] scaffold1723 (1 HSPs)
scaffold1723 (15-272)||(294-557)
[»] chr6 (9 HSPs)
chr6 (66-246)||(33234836-33235014)
chr6 (15-268)||(2602031-2602289)
chr6 (186-273)||(17261714-17261801)
chr6 (67-232)||(12843903-12844069)
chr6 (176-231)||(57106-57162)
chr6 (67-166)||(34708928-34709028)
chr6 (66-114)||(6821025-6821073)
chr6 (67-166)||(19294385-19294482)
chr6 (67-166)||(17540017-17540117)
[»] chr3 (3 HSPs)
chr3 (183-273)||(42718554-42718643)
chr3 (66-166)||(21408922-21409023)
chr3 (66-166)||(11410682-11410783)
[»] chr5 (5 HSPs)
chr5 (66-207)||(32676657-32676797)
chr5 (84-228)||(38989252-38989395)
chr5 (55-115)||(4112005-4112065)
chr5 (66-131)||(40837805-40837871)
chr5 (12-52)||(41815796-41815836)
[»] chr4 (7 HSPs)
chr4 (66-232)||(2641136-2641307)
chr4 (87-162)||(54305676-54305752)
chr4 (11-109)||(32593730-32593835)
chr4 (84-270)||(44507705-44507893)
chr4 (216-263)||(32593973-32594018)
chr4 (87-166)||(40289214-40289294)
chr4 (66-166)||(17732772-17732874)
[»] scaffold0325 (1 HSPs)
scaffold0325 (66-115)||(12877-12926)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 11820746 - 11820422
Alignment:
Q  11 cataggacaccgacacaactacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattg 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||     
T  11820746 cataggacaccgacaccactacctatatattaatttatttatcaaaattgcgaagcaaaatacatacatatgcatctaacttgagcaatttatttcattc 11820647  T
Q  111 aaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacc 210  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  11820646 aaaaagttctatgacaacatacaatagcatttgagctttatttatttatctactattaaaaattttaaaaatgttgtaatcatctttaatgtctataacc 11820547  T
Q  211 cttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagagnnnnnnnntaagacannnnnnngagttgtctgacaca 310  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||        |||||||       |||||||||||||||    
T  11820546 cttcgttgatcaacatttctcacacatctttaactcttgaatctactgtgtgtggaagcagagaaaaaaaataagacattattttgagttgtctgacaca 11820447  T
Q  311 cctcaaataagtgttatatagatgt 335  Q
    |||||||||||||||||||||||||    
T  11820446 cctcaaataagtgttatatagatgt 11820422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 34 - 273
Target Start/End: Complemental strand, 11811109 - 11810870
Alignment:
Q  34 tatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaatttctatgacaagataca 133  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||| |||||||| | | ||||||||||    
T  11811109 tatataataatttatttatcaaaattgagaagcaaaatacatacatatgcctctaacttgagcaatttatttcattaaaaaatttatctaacaagataca 11811010  T
Q  134 atagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcac 233  Q
    |||  |||||| ||||||| ||||||||||| |       |||||||| |  || ||||| ||| |||||||||| || ||| |||||||||||||||||    
T  11811009 ataatatttgacctttattaatttatctactgtcataaaatttaaaaacgccgttatcattttttatgtctataaaccctcgctgatcaacatttctcac 11810910  T
Q  234 atatctttaactcctgaatctactgtgtgtggaagcagag 273  Q
    |   ||||||||| |||||||||| ||||||||| |||||    
T  11810909 aaggctttaactcttgaatctactttgtgtggaaacagag 11810870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 11809495 - 11809236
Alignment:
Q  11 cataggacaccgacacaactacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattg 110  Q
    |||| |||||||||||  ||||||||||||||||||||||||| |||||  |||||||||||||||||||||  |||||||||||||||||||||||||     
T  11809495 cataagacaccgacactgctacctatatattaatttatttatctaaatttagaagcaaaatacatacatatgcttctaacttgagcaatttatttcatta 11809396  T
Q  111 aaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacc 210  Q
    |||||||| ||| |||||||||||||| |||||  |||||||  || ||||||  |       |||||||| ||||||||||  |||||||||||| |||    
T  11809395 aaaaatttatataacaagatacaatagtatttggcctttattacttcatctaccgtcaaaaaatttaaaaaggttgtaatcaaatttaatgtctatgacc 11809296  T
Q  211 cttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagca 270  Q
    | || ||||| || |  | ||||    ||||||||| |||||||||||||||| ||||||    
T  11809295 cctcattgataaaaaaatttcactaggctttaactcttgaatctactgtgtgtagaagca 11809236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 11812726 - 11812604
Alignment:
Q  11 cataggacaccgacacaactacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattg 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| |||||||||||||||| |||||| |||||||||||||||||||     
T  11812726 cataggacaccgacacagctacctatatattaatttatttatctaaattgggaagaaaaatacatacatatgcatctaatttgagcaatttatttcatt- 11812628  T
Q  111 aaaaatttctatgacaagatacaa 134  Q
    |||||||||||| |||||||||||    
T  11812627 aaaaatttctataacaagatacaa 11812604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 11814616 - 11814353
Alignment:
Q  11 cataggacaccgacacaactacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattg 110  Q
    ||||||||||||||||   |||||||||||||| | ||||||| |||||| ||||||||||||||| ||||| ||||||  |||||||||||||||||      
T  11814616 cataggacaccgacactgttacctatatattaagtgatttatctaaattgagaagcaaaatacataaatatgcatctaatatgagcaatttatttcatga 11814517  T
Q  111 aaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacc 210  Q
    ||| |||||  | ||| ||||||| |  |||||| || ||||  ||||| ||||||        ||||||||| |||||||| | |||||||||||||||    
T  11814516 aaatatttcattaacacgatacaacaatatttgacctctattattttatatactatcaaaaaaattaaaaatggtgtaatcaacattaatgtctataacc 11814417  T
Q  211 cttcgttgatcaaca-tttctcacatatctttaactcctgaatctactgtgtgtggaagcagag 273  Q
    | ||||||||||| | ||| | ||| ||||||||||| |||||||| |||||||||||||||||    
T  11814416 cctcgttgatcaatattttgttacacatctttaactcttgaatctattgtgtgtggaagcagag 11814353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 262
Target Start/End: Original strand, 27993901 - 27994101
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaa-aaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||||||||| || ||||||||||||||||||||||| || ||| |||||| |||||||||||||||| |||| ||||||||||  ||||||     
T  27993901 caaaatacatacatatgcatttaacttgagcaatttatttcattaaataaagttctataacaagatacaatagcaattgatctttatttatccatctacc 27994000  T
Q  165 atnnnnnnntttaaaaatg---ttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgt 261  Q
    ||       ||||||||||   ||||||| | ||||||||||||||| || || ||||| || |||||||||| ||||||||||| ||||||||||||||    
T  27994001 atcgaaaaatttaaaaatgcatttgtaataaactttaatgtctataaaccctccttgataaatatttctcacacatctttaactcttgaatctactgtgt 27994100  T
Q  262 g 262  Q
    |    
T  27994101 g 27994101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 11817050 - 11816926
Alignment:
Q  29 ctacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaatttctatgacaag 128  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||| |||||||||||||||||| |||||||| ||| |||||    
T  11817050 ctacctatatattaatttatttatctaaattgagaagcaaaatacatacataagcatctaacatgagcaatttatttcattaaaaaatttatataacaag 11816951  T
Q  129 atacaatagcatttgagctttattt 153  Q
    ||||||| | |||||| ||||||||    
T  11816950 atacaatcgtatttgacctttattt 11816926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 11815727 - 11815474
Alignment:
Q  12 ataggacaccgacacaactacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattga 111  Q
    ||||||||| |||||  ||| |||| |||||||||||||| | |||||| |||| |||||||| ||||||| |||||      |||||||||||| || |    
T  11815727 ataggacactgacactgctatctatttattaatttatttacctaaattgggaaggaaaatacaaacatatgcatcta------gcaatttatttctttaa 11815634  T
Q  112 aaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataaccc 211  Q
    |||| |||||| ||||||||||| |  ||||||  ||||||| ||||||||||||        ||||||| |||||||||| ||||||| |||||||| |    
T  11815633 aaaagttctataacaagatacaacaatatttgaaatttattt-tttatctactatctaaataattaaaaaagttgtaatcaactttaatatctataactc 11815535  T
Q  212 ttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagag 273  Q
    | ||||||||||||||||||| | |||| |||||| ||||||||||| |||| |||| ||||    
T  11815534 t-cgttgatcaacatttctcaaacatctctaactcttgaatctactgcgtgtagaagtagag 11815474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 272
Target Start/End: Complemental strand, 9730035 - 9729832
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||| ||||| |||  ||||||||||||||||||||||||| |||||| |||||| | ||| |    ||| |||||  ||||||||||  | |||||    
T  9730035 caaaatatatacacatgcttctaacttgagcaatttatttcattaaaaaatgttctataataaggt----tagtatttggactttatttatccacctact 9729940  T
Q  165 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtg 264  Q
    ||       ||||||   |||||||||| |||||||||  | |||| ||||||||||||||||||||||| ||||||||||| |||||| |||  |||||    
T  9729939 atcgaaaaatttaaatgcgttgtaatcaactttaatgtaaaaaacctttcgttgatcaacatttctcacacatctttaactcttgaatccactccgtgtg 9729840  T
Q  265 gaagcaga 272  Q
     |||||||    
T  9729839 aaagcaga 9729832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 72 - 253
Target Start/End: Original strand, 48598314 - 48598495
Alignment:
Q  72 acatacatatgaatctaacttgagcaatttatttcattgaaa-aatttctatgacaagatacaatagcatttgagctttatttatttatcta-ctatnnn 169  Q
    ||||||||||| ||||||||||| ||||| |||||||| ||| ||||| ||| ||| |||||||||| |||||| ||||||||||  | |||  |||       
T  48598314 acatacatatgcatctaacttgaacaattcatttcattaaaataatttatataacacgatacaatagtatttgacctttatttatcca-ctatatatcaa 48598412  T
Q  170 nnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatc 253  Q
        || ||||| ||||||| || ||||||| ||||| |||| || ||||||||||||||||||| ||||||||||| ||||||    
T  48598413 aaaattaaaaaacgttgtaaccaactttaatatctatgaccc-tcattgatcaacatttctcacacatctttaactcttgaatc 48598495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 330
Target Start/End: Complemental strand, 11809210 - 11809176
Alignment:
Q  296 gagttgtctgacacacctcaaataagtgttatata 330  Q
    |||||||||||||||||||| ||||||||||||||    
T  11809210 gagttgtctgacacacctcatataagtgttatata 11809176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 11812571 - 11812533
Alignment:
Q  226 tttctcacatatctttaactcctgaatctactgtgtgtg 264  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  11812571 tttctcacacatctttaactcttgaatctactgtgtgtg 11812533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 32716676 - 32716533
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||| || |  |||||||||||  ||||| ||| ||| |||||  |||||  |||||||||||||| |||||| ||||||||||| ||| |||    
T  32716676 caaaatacatatatgtatatctaacttgaataatttgttttattaaaaaaagttctaaaacaagatacaatagtatttgatctttatttattcatccact 32716577  T
Q  165 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataa 208  Q
    ||        ||||||||| || |||||  ||||||||||||||    
T  32716576 atcgaaaaagttaaaaatggtgcaatcaattttaatgtctataa 32716533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 50 - 255
Target Start/End: Original strand, 3387638 - 3387844
Alignment:
Q  50 tatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctt 148  Q
    |||| |||||| ||| ||||||||||||||||| || |||||||| |||||||||| ||| |||||  |||||| |||||||| ||||| |||||| |||    
T  3387638 tatctaaattgagaatcaaaatacatacatatgcatttaacttgaacaatttattttattaaaaaaagttctataacaagataaaatagtatttgacctt 3387737  T
Q  149 tatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcct 248  Q
    |||||||| |||||| ||       |||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||||| ||||||||||| |    
T  3387738 tatttattcatctaccatcgaaaaatttaaaaacgttgtaatcaactttaatgtctataacccttgattgatcaacatttctcacacatctttaactctt 3387837  T
Q  249 gaatcta 255  Q
    |||||||    
T  3387838 gaatcta 3387844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 16426367 - 16426637
Alignment:
Q  9 agcataggacaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaattt 101  Q
    |||||||||||| |||||  |||||||||||||||||||||||| |||       |||  ||| ||||||||||||||||| ||||||||||||||||||    
T  16426367 agcataggacactgacaccgctacctatatattaatttatttataaaagatataaattaagaatcaaaatacatacatatgcatctaacttgagcaattt 16426466  T
Q  102 atttcattgaaa-aatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaat 200  Q
    | |||||| ||| || |||||| ||||  |||||||| |||||  |||||||||| |||||| |||       ||||||     |||||||| |||||||    
T  16426467 acttcattaaaacaagttctataacaaattacaatagtatttggcctttatttatctatctattattgaaaaatttaaatgcactgtaatcaactttaat 16426566  T
Q  201 gtctataacccttcgttgatcaacatttctcacatatctttaactcc-tgaatctactgtgtgtggaagca 270  Q
    ||||||||| | |||||||||||||||||||||| ||||||||| || |||||||||| ||||| ||||||    
T  16426567 gtctataactcctcgttgatcaacatttctcacacatctttaaccccttgaatctactatgtgtagaagca 16426637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 66 - 273
Target Start/End: Complemental strand, 50127323 - 50127116
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaa-aaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| || ||| |||||| |||||||||||||| |||||  |||||||| || |||||||    
T  50127323 caaaatacatacatatgcatctaacttgaacaatttatttcattaaataaagttctataacaagatacaatagtatttggcctttattt-ttcatctact 50127225  T
Q  165 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtg 264  Q
    ||       ||||||   | || | ||| |||||||||||||||||| ||||| ||||| |||||||| | ||||||||||| |||||||||| || |||    
T  50127224 atcgaaaaatttaaatgcgctgcattcaactttaatgtctataacccctcgttaatcaatatttctcatacatctttaactcttgaatctactctgcgtg 50127125  T
Q  265 gaagcagag 273  Q
    |||||||||    
T  50127124 gaagcagag 50127116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 51 - 272
Target Start/End: Original strand, 3954934 - 3955155
Alignment:
Q  51 atcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagcttt 149  Q
    |||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||  ||||| |||||  | ||||||| || | |||||| ||||    
T  3954934 atcaaaattgagaatcagaatacatacatgtgcatctaacttgagcaatttatttcattaaaaaaagttctaaaataagatacgatcgtatttgaccttt 3955033  T
Q  150 atttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctc-acatatctttaactcct 248  Q
    ||||||  |||||||||         |||||| |||||||||| ||||||| ||| |||||| | ||||||||||||||||| | | |||||||| || |    
T  3955034 atttatccatctactatcgaaaaagctaaaaacgttgtaatcaactttaatctctgtaaccccttgttgatcaacatttctcaagagatctttaa-tctt 3955132  T
Q  249 gaatctactgtgtgtggaagcaga 272  Q
    | |||||| |||||||||||||||    
T  3955133 g-atctaccgtgtgtggaagcaga 3955155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 66 - 232
Target Start/End: Complemental strand, 48632746 - 48632578
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattga-aaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    |||||| |||||||| |||| ||||||||||| ||||||||||||| |||| |||||  ||||||||| |||| |||||| |||||||||||  ||||||    
T  48632746 caaaattcatacataagaatttaacttgagcagtttatttcattgaaaaaagttctaaaacaagataccatagtatttgacctttatttattcttctact 48632647  T
Q  165 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataa-cccttcgttgatcaacatttctca 232  Q
    ||         |||||| |||||||||| ||||||| ||||||| ||| |  |||||||||||||||||    
T  48632646 atcaaaaaagctaaaaacgttgtaatcaactttaatttctataaccccgtaattgatcaacatttctca 48632578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 9149161 - 9149060
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||| ||||||  | ||  ||||||||  |||| |||| | |||||||||||||||||||    
T  9149161 caaaatacatatataagaatctaacttgagaaatttatttcattagaaaaaagtttaaaacaagatatcatagtattttacctttatttatttatctact 9149062  T
Q  165 at 166  Q
    ||    
T  9149061 at 9149060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 125176 - 125225
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 115  Q
    ||||||||||||| | | |||||||||||||||||||||||||| |||||    
T  125176 caaaatacatacacaagtatctaacttgagcaatttatttcattaaaaaa 125225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 7021735 - 7021634
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||| |||||||   |||||||||| ||||||||||| |||||||||  |||||  |||| |||| | |  |||||| |||||||||||||||||||    
T  7021735 caaaatatatacataaacatctaacttgcgcaatttattttattgaaaaaagttctaaaacaaaataccacaagatttgacctttatttatttatctact 7021636  T
Q  165 at 166  Q
    ||    
T  7021635 at 7021634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 18476506 - 18476607
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagc-tttatttatttatctact 164  Q
    |||||||||| ||| | ||||||||||||||| |||||||||| |||||| |||||   |||||||   ||| |||||| | |||||||||| |||||||    
T  18476506 aaaatacatatataagcatctaacttgagcaagttatttcattagaaaaagttctaaagcaagatatcgtagtatttgaccttttatttattcatctact 18476605  T
Q  165 at 166  Q
    ||    
T  18476606 at 18476607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 166
Target Start/End: Original strand, 23431866 - 23431967
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||| ||| | ||||||||||||||| |||||||||| |||||| |||||  |||| |||   ||| ||||||  || ||||||| |||||||    
T  23431866 caaaatacatatataagcatctaacttgagcaagttatttcattagaaaaagttctaaaacaaaatatcgtagtatttgacattcatttattcatctact 23431965  T
Q  165 at 166  Q
    ||    
T  23431966 at 23431967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 126360 - 126419
Alignment:
Q  175 ttaaaaatgttgtaatcatctttaatgtctataacccttcg--ttgatcaacatttctca 232  Q
    ||||||||||| |||||| ||||||||||||||||||  |   |||||||||||||||||    
T  126360 ttaaaaatgttataatcaactttaatgtctataacccccctaattgatcaacatttctca 126419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 66 - 272
Target Start/End: Original strand, 17651258 - 17651465
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaa-aatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  || || |||||| ||||| |||||||  |||||  ||||||||||  |||||||    
T  17651258 caaaatacatacatatgcatctaacttgagcaatttatttcattacaagaagttctataacaagttacaataatatttggcctttatttatccatctact 17651357  T
Q  165 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtg 264  Q
    ||        ||||| | |||||||||| |||||||||||||||||  |||||||||||||||| ||||| | ||||||||| |||||||| ||||||||    
T  17651358 attgaaaaacttaaatacgttgtaatcaactttaatgtctataacctctcgttgatcaacatttttcacacacctttaactcttgaatctattgtgtgtg 17651457  T
Q  265 gaagcaga 272  Q
     |||||||    
T  17651458 aaagcaga 17651465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 41848957 - 41849067
Alignment:
Q  12 ataggacaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatt 104  Q
    |||||||||||||||  ||| |||||||||||||||||||| |||       |||| ||| |||||||||||||||||||||||||||||||| ||||||    
T  41848957 ataggacaccgacaccgctatctatatattaatttatttataaaatatctaaattgagaatcaaaatacatacatatgaatctaacttgagcactttatt 41849056  T
Q  105 tcattgaaaaa 115  Q
    ||||| |||||    
T  41849057 tcattaaaaaa 41849067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 228
Target Start/End: Complemental strand, 44650126 - 44649966
Alignment:
Q  71 tacatacatatgaatctaacttgagcaatttatttcattgaaaaat--ttctatgacaagatacaatagcatttgagctttatttatttatctactatnn 168  Q
    |||||||||| | || ||| |||||||||||||||||||||||||   || ||  ||||||||| |||| |||||| ||||||||||| |||||||||      
T  44650126 tacatacataagcatataaattgagcaatttatttcattgaaaaaaaattataaaacaagataccatagaatttgacctttatttattcatctactatca 44650027  T
Q  169 nnnnntttaaaaatgttgtaatcatctttaatgtctataa-cccttcgttgatcaacattt 228  Q
          |||||||||||||||||| ||||||| ||||||| ||| |  |||||||||||||    
T  44650026 aaaaagttaaaaatgttgtaatcaactttaatttctataagcccctaattgatcaacattt 44649966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 270
Target Start/End: Complemental strand, 4748224 - 4748037
Alignment:
Q  85 tctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatg 183  Q
    ||||||||||||||||||||||||| |||||| |||||  ||||| ||| |||| |||||| ||||||||||| |||| ||||         ||||||||    
T  4748224 tctaacttgagcaatttatttcattggaaaaagttctaaaacaagttacgatagtatttgacctttatttattcatcttctattgaacaaactaaaaatg 4748125  T
Q  184 ttgtaatcatctttaatg--tctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagca 270  Q
     |||||||| ||||||||  |||||||||| ||  ||||||||||||| || | |  | |||||| || |||||| |||||||||||||    
T  4748124 ctgtaatcaactttaatgtctctataacccctcagtgatcaacatttcaca-acacatgtaactcttggatctacggtgtgtggaagca 4748037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 9929631 - 9929731
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||||||||| |||   |||||| ||||||||||||||||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| ||||||||    
T  9929631 aaaatacatatataaacatctaatttgagcaatttatttcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctacta 9929730  T
Q  166 t 166  Q
    |    
T  9929731 t 9929731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 18724775 - 18724691
Alignment:
Q  189 atcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagag 273  Q
    |||| |||| ||||||||||  | |||||||||| ||||||||||| ||||||||||| |||||||||| |||| ||||| ||||    
T  18724775 atcaactttgatgtctataattcctcgttgatcagcatttctcacacatctttaactcttgaatctactatgtgcggaagtagag 18724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 26576061 - 26576161
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||||||||| |||   |||||||||||||||||||| ||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| ||||||||    
T  26576061 aaaatacatatataaacatctaacttgagcaatttatgtcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctacta 26576160  T
Q  166 t 166  Q
    |    
T  26576161 t 26576161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 32200985 - 32200885
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||||||||| |||   |||||||||||||||||||| ||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| ||||||||    
T  32200985 aaaatacatatataaacatctaacttgagcaatttatgtcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctacta 32200886  T
Q  166 t 166  Q
    |    
T  32200885 t 32200885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 13037325 - 13037408
Alignment:
Q  84 atctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactat 166  Q
    |||||||||||||||||||| ||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| |||||||||    
T  13037325 atctaacttgagcaatttatgtcatttgaaaaagttctacaacaagatatcatagtatttgatctttatttattcatctactat 13037408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 18724936 - 18724895
Alignment:
Q  11 cataggacaccgacacaactacctatatattaatttatttat 52  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  18724936 cataggacaccgacaccgctacctatatattaatttatttat 18724895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 34409743 - 34409647
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctac 163  Q
    |||||||||| |||   ||||||||||||||||||| | |||| |||||| |||||  ||||||||  |||| |||||| ||||||||||||||||||    
T  34409743 aaaatacatatataaacatctaacttgagcaatttagt-cattagaaaaagttctacaacaagatattatagtatttgacctttatttatttatctac 34409647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 38783832 - 38783673
Alignment:
Q  14 aggacaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttc 106  Q
    ||||||||||| |  ||| |||||||||||||||||||| |||       |||| ||| ||||||||||||||||  ||||| || | ||||||||||||    
T  38783832 aggacaccgacgctgctatctatatattaatttatttataaaatatctgaattgagaatcaaaatacatacatatacatctatctagggcaatttatttc 38783733  T
Q  107 att-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||  ||||| || ||| ||||||||||| |  ||||||  |||||||||  ||||||||    
T  38783732 attaaaaaaagttttataacaagatacaacaatatttgacatttatttatccatctacta 38783673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 16661351 - 16661291
Alignment:
Q  55 aaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 115  Q
    |||||| ||| || ||||||||||| || |||||||||||||||||||||| ||| |||||    
T  16661351 aaattgagaatcagaatacatacatgtgtatctaacttgagcaatttattttattaaaaaa 16661291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 164
Target Start/End: Original strand, 27004035 - 27004133
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    |||||||||| |||   |||||||||||| |||||||||||||  ||||| ||||   ||||||||  |||| |||||| ||||||||||| |||||||    
T  27004035 aaaatacatatataaacatctaacttgagaaatttatttcattaaaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctact 27004133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 34409633 - 34409577
Alignment:
Q  176 taaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctca 232  Q
    |||||||| | |||||| || ||||||||||||||| |  |||||||||||||||||    
T  34409633 taaaaatgatataatcaactataatgtctataacccctaattgatcaacatttctca 34409577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 50 - 255
Target Start/End: Complemental strand, 18393730 - 18393524
Alignment:
Q  50 tatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctt 148  Q
    |||| |||||| ||| || |||||||||||||| || |||||||| |||||||||| ||| |||||  || ||| |||||||| ||||| |||||| |||    
T  18393730 tatctaaattgagaatcataatacatacatatgcatttaacttgaacaatttattttattaaaaaaagttttataacaagataaaatagtatttgacctt 18393631  T
Q  149 tatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcct 248  Q
    |||||||  |||||||||       |||||||| |||||||||| ||||||||||||||||||||  |||||||||||||||| || ||||||||||| |    
T  18393630 tatttatccatctactatcaaaaaatttaaaaacgttgtaatcaactttaatgtctataacccttgattgatcaacatttctcgcacatctttaactctt 18393531  T
Q  249 gaatcta 255  Q
    |||||||    
T  18393530 gaatcta 18393524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 27401812 - 27401997
Alignment:
Q  56 aattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttattta 154  Q
    ||||| ||| ||||||| |||||| || ||||||||||||||||||||||||||  ||||| || ||| |||||||||||||| |||||  |||||||||    
T  27401812 aattgagaatcaaaatatatacatctgcatctaacttgagcaatttatttcattaaaaaaagttatataacaagatacaatagaatttggcctttattta 27401911  T
Q  155 tttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctt 240  Q
    |  |||||||||          ||||| |||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||||    
T  27401912 tccatctactattgaaagaaaaaaaaacgttgtaatcaactttaatgtctataacccctcgttgatcaacatttttcacacatctt 27401997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 50 - 273
Target Start/End: Original strand, 13097427 - 13097645
Alignment:
Q  50 tatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctt 148  Q
    |||| |||||| ||| ||||||||||||||||| ||||||||  |||||||||||||||| |||||  ||| || |||| ||   || | ||||     |    
T  13097427 tatctaaattgagaatcaaaatacatacatatgcatctaactcaagcaatttatttcattaaaaaaagttccataacaatatttgatcg-attt-----t 13097520  T
Q  149 tatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcct 248  Q
    |||||||| |||||||||       || ||||||||| |||||| |||||||||| ||||||  | |||||||||||||||||||| ||||||||||| |    
T  13097521 tatttattcatctactattgaaaaattaaaaaatgttttaatcaactttaatgtccataacctcttgttgatcaacatttctcacacatctttaactctt 13097620  T
Q  249 gaatctactgtgtgtggaagcagag 273  Q
    |||||||||||||||||||||||||    
T  13097621 gaatctactgtgtgtggaagcagag 13097645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 270
Target Start/End: Complemental strand, 2889884 - 2889699
Alignment:
Q  79 tatgaatctaacttgagcaatttatttcattgaaaaatt-tctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnnttta 177  Q
    |||| |||| ||||||||||||||||||||| |||||   ||||| |||||||||||||| |||||  ||||||||||  |||||||||       ||||    
T  2889884 tatgtatcttacttgagcaatttatttcattaaaaaaaggtctataacaagatacaatagtatttggcctttatttatccatctactatcgaaaaattta 2889785  T
Q  178 aaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagca 270  Q
    |||| |||||| ||| |||       |||| ||||||||||||||||||||  | ||  |||||||||| ||||| |||| ||||||||||||    
T  2889784 aaaacgttgtattcaactt-------tatagcccttcgttgatcaacattttccgcacgtctttaactcttgaatatactatgtgtggaagca 2889699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 267
Target Start/End: Original strand, 1226083 - 1226258
Alignment:
Q  94 agcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatca 192  Q
    ||||||||||||||||||||||  || ||  ||||||||| | || |||||| ||||||||||| |||||||||       |||||||||||||||||||    
T  1226083 agcaatttatttcattgaaaaaagttataaaacaagataccagagtatttgatctttatttattcatctactatcaaaaa-tttaaaaatgttgtaatca 1226181  T
Q  193 tctttaatgtctataaccct-tcgttgatcaacatttctc-acatatctttaactcctgaatctactgtgtgtggaa 267  Q
     ||||||| ||||||| ||| |  ||||| |||||||||| ||| || |||||||| || ||||||  |||||||||    
T  1226182 actttaatttctataaacctctaattgattaacatttctcaacacatatttaactcttgtatctacgatgtgtggaa 1226258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 270
Target Start/End: Complemental strand, 2875532 - 2875344
Alignment:
Q  76 acatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnnt 174  Q
    ||||||| ||||||||||||||||||| ||||||  |||||  | ||| |||||||||||||| |||||  ||||||||||  |||||||||       |    
T  2875532 acatatgtatctaacttgagcaatttagttcattaaaaaaaggtttataacaagatacaatagtatttggcctttatttatccatctactattgaaaaat 2875433  T
Q  175 ttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagca 270  Q
    ||||| | |||||||||| |||       |||| ||||||||||||||||||||  | ||  |||| ||||| ||||| |||| ||||||||||||    
T  2875432 ttaaacacgttgtaatcaactt-------tatagcccttcgttgatcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagca 2875344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 270
Target Start/End: Original strand, 3159842 - 3160028
Alignment:
Q  78 atatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnnttt 176  Q
    ||||| ||||||||||||||||||||||||||  |||||  ||||| ||||| |||||||| |||||  ||||||||||  ||||| |||       |||    
T  3159842 atatgtatctaacttgagcaatttatttcattaaaaaaaggtctataacaagttacaatagtatttggcctttatttatccatctaatatcgaaaaattt 3159941  T
Q  177 aaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagca 270  Q
    ||| | |||||||||| |||       |||| ||||||||||||||||||||  | ||  |||||||||| ||||| |||| |||||| |||||    
T  3159942 aaacacgttgtaatcaactt-------tatagcccttcgttgatcaacattttccgcacgtctttaactcttgaatatactatgtgtgtaagca 3160028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 28867225 - 28867336
Alignment:
Q  11 cataggacaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttat 103  Q
    |||| |||||| |||| |||| |||||||||||||||||||| |||       |||| ||| ||||||||||| ||||| ||||||||| || |||||||    
T  28867225 cataagacaccaacactactatctatatattaatttatttataaaacatttaaattgagaatcaaaatacatatatatgcatctaacttaagtaatttat 28867324  T
Q  104 ttcattgaaaaa 115  Q
    |||||| |||||    
T  28867325 ttcattaaaaaa 28867336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 3145256 - 3145339
Alignment:
Q  84 atctaacttgagcaatttatttcattgaaaaatt-tctatgacaagatacaatagcatttgagctttatttatttatctactat 166  Q
    |||| ||||||||||||||||||||| |||||   ||||| |||||||||||||| |||||  ||||||||||  |||||||||    
T  3145256 atcttacttgagcaatttatttcattaaaaaaaggtctataacaagatacaatagtatttggcctttatttatccatctactat 3145339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 2796200 - 2796294
Alignment:
Q  76 acatatgaatctaacttgagcaatttatttcatt----gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactat 166  Q
    ||||||| ||||||||||||||||||||||||||     |||||  ||||| ||||| |||||||| |||||  ||||||||||  |||||||||    
T  2796200 acatatgcatctaacttgagcaatttatttcattaaaaaaaaaaggtctataacaagttacaatagtatttggcctttatttatccatctactat 2796294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 28869800 - 28869899
Alignment:
Q  23 acacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 115  Q
    |||| |||| |||||||||||||||||||| |||       |||| ||| ||||||||||||||||| ||||||||| |  ||||||||||||| |||||    
T  28869800 acactactatctatatattaatttatttataaaatatttaaattgagaatcaaaatacatacatatgcatctaacttaaataatttatttcattaaaaaa 28869899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 15850619 - 15850518
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||| ||| | |||||| |||||||| |||||||||| |||||| || ||  ||||||||  | || ||||||  |||||||||| |||||||    
T  15850619 caaaatacatatataagtatctaatttgagcaaattatttcattagaaaaagttataaaacaagatatcacagtatttgacatttatttattcatctact 15850520  T
Q  165 at 166  Q
    ||    
T  15850519 at 15850518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 28421061 - 28421141
Alignment:
Q  87 taacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactat 166  Q
    ||||||||||||||||| ||||| |||||| || ||  ||||||||  |||  |||||| ||||||||||| |||||||||    
T  28421061 taacttgagcaatttatgtcattagaaaaagttttacaacaagatatcatatgatttgacctttatttattcatctactat 28421141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 50 - 273
Target Start/End: Original strand, 209174 - 209396
Alignment:
Q  50 tatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctt 148  Q
    |||| |||||| ||| ||||||||||||||||| ||||||||  |||||||||||||||| |||||  |||||| |||| |||||| |  |||||  |||    
T  209174 tatctaaattgagaatcaaaatacatacatatgcatctaact--agcaatttatttcattaaaaaaagttctataacaaaatacaacaatatttggcctt 209271  T
Q  149 tatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcct 248  Q
    |||||||  |||||| ||       |||||||| |||||||| | |||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |    
T  209272 tatttatccatctacaatcgaaaaatttaaaaacgttgtaataaactttaatgtcgataacccctcgttgatcaacatttctcacaaatctttaactctt 209371  T
Q  249 gaatctactgtgtgtggaagcagag 273  Q
    ||||||||  |||||| ||||||||    
T  209372 gaatctaccatgtgtgaaagcagag 209396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 557 - 294
Alignment:
Q  15 ggacaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttca 107  Q
    ||||||||||||  ||| |||||||||||||||||||| |||       |||  ||| ||||||||||| ||||| ||||||||||||||| ||||||||    
T  557 ggacaccgacaccgctatctatatattaatttatttataaaagatcttaattaagaatcaaaatacata-atatgcatctaacttgagcaaattatttca 459  T
Q  108 ttgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctat 206  Q
    || |||||  |||||| |||||||||||||| |||||| ||||||||||  |||| ||||       || ||| | |||| ||||| |||| ||||| ||    
T  458 ttaaaaaaaattctataacaagatacaatagtatttgacctttatttatccatctgctatcgaaaa-ttgaaatacgttggaatcaactttgatgtccat 360  T
Q  207 aacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcaga 272  Q
    ||||| | |||||||||||||||||||| ||||||||| | |||||||||||||||| ||||||||    
T  359 aacccattgttgatcaacatttctcacacatctttaacccttgaatctactgtgtgtagaagcaga 294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 246
Target Start/End: Complemental strand, 33235014 - 33234836
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    ||||||||||||||  | |||||||||||||||||||||||||| ||||| || ||| |||||||||||||| |||||| | ||||||||  ||||||||    
T  33235014 caaaatacatacat--gcatctaacttgagcaatttatttcattaaaaaagttttataacaagatacaatagtatttga-ccttatttatccatctacta 33234918  T
Q  166 tnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatc--aacatttctcacatatctttaactc 246  Q
    |       ||| ||||||||||||||| |||||||||||||||||| |  ||||||  ||||||||||||  |||||||||||    
T  33234917 t-cgaaaatttcaaaatgttgtaatcaactttaatgtctataaccccttcttgatcaaaacatttctcacgcatctttaactc 33234836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 2602031 - 2602289
Alignment:
Q  15 ggacaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttca 107  Q
    ||||||||||||  |||||||||||||||||||||||| |||       |||  ||| ||||||||| ||||||| ||||||||| ||||  ||| ||||    
T  2602031 ggacaccgacacctctacctatatattaatttatttataaaagatctaaattaagaatcaaaatacaaacatatgcatctaactt-agcagattacttca 2602129  T
Q  108 tt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctat 206  Q
    || ||||||  | ||| |||||||||||||| ||||   ||||||||||  || ||||||       ||||||  ||||||||||| ||||||||| |||    
T  2602130 ttagaaaaaggtatataacaagatacaatagtatttaccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttat 2602229  T
Q  207 aacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaag 268  Q
    || || | |||||||||||||||||||| |  |||||||| |||||||  ||||||||||||    
T  2602230 aaaccctagttgatcaacatttctcacaga--tttaactcttgaatctgttgtgtgtggaag 2602289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 17261714 - 17261801
Alignment:
Q  186 gtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagag 273  Q
    ||||||| |||||||||  ||||||| || ||||||||||||||||||| ||||||||||| | |||||| |||||||||||||||||    
T  17261714 gtaatcaactttaatgtacataacccctcattgatcaacatttctcacacatctttaactcttaaatctaatgtgtgtggaagcagag 17261801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 12843903 - 12844069
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||||||||| |||   |||||||||||||||| ||||||||| ||| || |||||  | ||||||  |||| |||||| ||||||||||| ||||||||    
T  12843903 aaaatacatatataaacatctaacttgagcaatatatttcattagaacaagttctacaataagatatcatagtatttgacctttatttattcatctacta 12844002  T
Q  166 tnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctca 232  Q
    |         |||||||| | |||||| || |||||| |||||||| |  |||||||||||||||||    
T  12844003 tcaaaaaagctaaaaatgatataatcaactataatgtgtataacccctaattgatcaacatttctca 12844069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 57106 - 57162
Alignment:
Q  176 taaaaatgttgtaatcatctttaatgtctataaccct-tcgttgatcaacatttctc 231  Q
    |||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||    
T  57106 taaaaatgttataatcaactttaatgtctataaccctctagttgatcaacatttctc 57162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 34708928 - 34709028
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||||||||| |||   |||||||||||| ||||||||||||| |||||| ||||   ||||||||  |||| |||||| ||||||||||| ||||||||    
T  34708928 aaaatacatatataaacatctaacttgagaaatttatttcattagaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctacta 34709027  T
Q  166 t 166  Q
    |    
T  34709028 t 34709028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 6821025 - 6821073
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaa 114  Q
    ||||||| ||||||||| ||||| |||||||||||||||||||| ||||    
T  6821025 caaaatatatacatatgcatctatcttgagcaatttatttcattaaaaa 6821073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 19294385 - 19294482
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||||||||| |||   ||||||||| |||||||||||||||| |||||| |||    ||||||||  |||| |||||| ||||||||||| ||||||||    
T  19294385 aaaatacatatataaacatctaacttaagcaatttatttcattagaaaaagttc---aacaagatatcatagtatttgacctttatttattcatctacta 19294481  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 17540017 - 17540117
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||||||||| |||   |||||||||| |||||||||  |||| |||||| ||||   | ||||||  |||| |||||| ||||||||||||||||||||    
T  17540017 aaaatacatatataaacatctaacttgggcaatttatgacattagaaaaagttctgcaataagatatcatagtatttgacctttatttatttatctacta 17540116  T
Q  166 t 166  Q
    |    
T  17540117 t 17540117  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 273
Target Start/End: Complemental strand, 42718643 - 42718554
Alignment:
Q  183 gttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagag 273  Q
    |||| ||||| ||||||||| ||||| || |||||| |||||||||||||||  | |||||||| | |||||| |||||||||||||||||    
T  42718643 gttggaatcaactttaatgtttataatccctcgttgttcaacatttctcacacgt-tttaactcttaaatctattgtgtgtggaagcagag 42718554  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 21409023 - 21408922
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||| | ||| |||||||| |||||||| |||||||||| |||||| |||||  | ||||||   ||| |||||| ||||||||||| |||||||    
T  21409023 caaaatacaaatataagaatctaatttgagcaagttatttcattagaaaaaattctaaaataagatatcgtagtatttgacctttatttattcatctact 21408924  T
Q  165 at 166  Q
    ||    
T  21408923 at 21408922  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 166
Target Start/End: Original strand, 11410682 - 11410783
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    |||||||||||  || | ||||||||||||||| |||||||||| |||||| |||||  | ||||||   ||| |||| | ||||||||||| |||||||    
T  11410682 caaaatacatatttaagcatctaacttgagcaagttatttcattagaaaaagttctaaaagaagatatcgtagtatttaacctttatttattcatctact 11410781  T
Q  165 at 166  Q
    ||    
T  11410782 at 11410783  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 32676797 - 32676657
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||||||| | |||||| ||||||||||||||||||| |||||| || ||  ||||||||  |||  |||||| | ||||||||| |||||||    
T  32676797 caaaatacatacataagcatctaa-ttgagcaatttatttcattagaaaaagttataaaacaagatatcatattatttgatc-ttatttattcatctact 32676700  T
Q  165 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctata 207  Q
    ||        ||||||||||| |||||| ||||||||||||||    
T  32676699 atcaaaaaagttaaaaatgttataatcaactttaatgtctata 32676657  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 38989395 - 38989252
Alignment:
Q  84 atctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaat 182  Q
    |||||||||||||||||||| ||||| |||||| |||||  ||||||||  |||| ||||||  |||||||||| |||||||||       |||||||||    
T  38989395 atctaacttgagcaatttatgtcattagaaaaagttctacaacaagatatcatagtatttgacttttatttattcatctactatcaaaagatttaaaaat 38989296  T
Q  183 gttgtaatcatctttaatgtctataacccttcgttgatcaacattt 228  Q
    | | ||||||    ||||||||||||||| |  |||||||||||||    
T  38989295 gatataatca--aataatgtctataacccctaattgatcaacattt 38989252  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 4112005 - 4112065
Alignment:
Q  55 aaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 115  Q
    |||||| ||| ||||||||||||||||| |||||||  |||| |||||||||||| |||||    
T  4112005 aaattgagaatcaaaatacatacatatgcatctaaccggagccatttatttcattaaaaaa 4112065  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 40837805 - 40837871
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagata 131  Q
    ||||||||||| ||| | ||||||||||||||| |||||||||| |||||| |||||  ||||||||    
T  40837805 caaaatacatatataagcatctaacttgagcaaattatttcattagaaaaagttctaaaacaagata 40837871  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 41815836 - 41815796
Alignment:
Q  12 ataggacaccgacacaactacctatatattaatttatttat 52  Q
    |||||||||||||||  |||| |||||||||||||||||||    
T  41815836 ataggacaccgacaccgctacatatatattaatttatttat 41815796  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 232
Target Start/End: Original strand, 2641136 - 2641307
Alignment:
Q  66 caaaatacataca---tatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatct 161  Q
    |||||||||||||   || |||| ||| |||||||| ||||||||||||||||  |||||  |||| |||| || | |||||| ||||||||||||||||    
T  2641136 caaaatacatacacaataagaatttaatttgagcaacttatttcattgaaaaaagttctaaaacaaaatactatggtatttgacctttatttatttatct 2641235  T
Q  162 actatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataac-ccttcgttgatcaacatttctca 232  Q
    |||||        | |||||  ||||||||| ||||||| |||||||| || |  |||||||||||||||||    
T  2641236 actataaaaaaagtcaaaaacattgtaatcaactttaatttctataactccatgattgatcaacatttctca 2641307  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 54305676 - 54305752
Alignment:
Q  87 taacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatcta 162  Q
    ||||||||||||||||||| ||| |||||| ||||| |||||||||  |||| |||||| ||||||||||| |||||    
T  54305676 taacttgagcaatttatttaattagaaaaagttctacgacaagatatcatagtatttgacctttatttattcatcta 54305752  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 32593730 - 32593835
Alignment:
Q  11 cataggacaccgacacaactacctatatattaatttatttatcaa-------aattgtgaagcaaaatacatacatatgaatctaacttgagcaatttat 103  Q
    |||||||||| |||||  |||||| |||| |||||||||||| ||       |||| |||| ||||||||| ||||||| ||||||||| ||||||||||    
T  32593730 cataggacactgacaccgctacctgtatactaatttatttataaatgatctaaattatgaatcaaaatacacacatatgcatctaacttaagcaatttat 32593829  T
Q  104 ttcatt 109  Q
    ||||||    
T  32593830 ttcatt 32593835  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 270
Target Start/End: Original strand, 44507705 - 44507893
Alignment:
Q  84 atctaacttgagcaatttatttcattgaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatg 183  Q
    |||||| ||||| ||||||||||||| ||||| |||||  |||| |||  ||  ||||||| ||||||||||  |||| ||||         ||||||||    
T  44507705 atctaatttgagaaatttatttcattaaaaaaattctaaaacaaaatatgatgacatttgacctttatttatccatcttctataaaaaaagataaaaatg 44507804  T
Q  184 ttgtaatcatctttaatgtctataacccttcgttgatc-aacatttctc-acatatctttaactcctgaatctactgtgtgtggaagca 270  Q
    |||||||   ||||||||||||||| || || |||||| |||||||||| |||||| |||||||| ||  ||||  |||||||||||||    
T  44507805 ttgtaattgactttaatgtctataatccctcattgatctaacatttctcaacatatatttaactcatgtgtctatggtgtgtggaagca 44507893  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 32593973 - 32594018
Alignment:
Q  216 ttgatcaacatttctcacatatctttaactcctgaatctactgtgtgt 263  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||    
T  32593973 ttgatcaacatttctcacat--ctttaactcttgaatctactgtgtgt 32594018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 40289294 - 40289214
Alignment:
Q  87 taacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactat 166  Q
    |||||||  |||||||||||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| |||||||||    
T  40289294 taacttggacaatttatttcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactat 40289214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 166
Target Start/End: Original strand, 17732772 - 17732874
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagc-tttatttatttatctac 163  Q
    ||||||||||| ||| | ||||||||||||||| |||||||||| |||||| |||||   |||||||   ||| |||||| | |||||||||| ||||||    
T  17732772 caaaatacatatataagcatctaacttgagcaagttatttcattagaaaaagttctaaagcaagatatcgtagtatttgaccttttatttattcatctac 17732871  T
Q  164 tat 166  Q
    |||    
T  17732872 tat 17732874  T

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Target: scaffold0325 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 12877 - 12926
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 115  Q
    ||||||||| ||||| |||| |||||||||||||||||||||| ||||||    
T  12877 caaaatacaaacataagaatttaacttgagcaatttatttcatcgaaaaa 12926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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