View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12930_high_16 (Length: 348)
Name: NF12930_high_16
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 52824389 - 52824065
Alignment:
| Q |
1 |
ctacgcatgctctcgctagagaaagaaaccagaatattttcctcatgaatatgataattagcatcatcatgcactatatgattctggtgttgtagttcat |
100 |
Q |
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| T |
52824389 |
ctacgcatgctctcgctagagaaagaaaccagaatattttcctcatgaatatgataattagcatcatcatgcactatatgattctggtgttgtagttcat |
52824290 |
T |
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| Q |
101 |
gagagggaacagaagaagaaggggaatcaaggaaatcttcaaacttccaacctgggatagtgtttatcaagtactcagatatagtaaaattaccagtttc |
200 |
Q |
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| T |
52824289 |
gagagggaacagaagaagaaggggaatcaaggaaatcttcaaacttccaacctgggatagtgtttatcaagtactcagatatagtaaaattaccagtttc |
52824190 |
T |
|
| Q |
201 |
ttcatgaagagtgggaggaggagcaggagagtgcagcttgatcccacttagaagaaacctattatgcttcttggtgtgttcgttgacaccatgaaccttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52824189 |
ttcatgaagagtgggaggaggagcaggagagtgcagcttgatcccacttagaagaaacctattatgcttcttggtgtgttcgttgacaccgtgaaccttc |
52824090 |
T |
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| Q |
301 |
aaatcacactctttgcacacaatcg |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
52824089 |
aaatcacactctttgcacacaatcg |
52824065 |
T |
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