View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12930_high_2 (Length: 755)
Name: NF12930_high_2
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 626; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 19 - 743
Target Start/End: Complemental strand, 9994704 - 9993986
Alignment:
| Q |
19 |
ttttctatatccgttgcatggctagatctattgattccgtcattacgatactttattattcctccttttcttcttgcaacaataatcattgtaaaggaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9994704 |
ttttctatatccgttgcatggctagatctattgattccgtcattacgatactttattatttctccttttcttcttgcaacaataatcattgtaaaggaaa |
9994605 |
T |
|
| Q |
119 |
taaagttgattctacatgaattttatttaattgtagtagtattttttattgtttattctccatagaaactaaaacgaaataagttaatgtgaataaaact |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9994604 |
taaagttgattctacatgaattttatttaattgtagtagtattttttatt-------ctccatagaaactaaaacgaaataagttaatgtgaataaaact |
9994512 |
T |
|
| Q |
219 |
aaaaattcatagttttatgatgcttaaaatacatttagaccaaataaataattaaaaccaattctatgaatgtatagaaaggtacaatatccctttcnnn |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9994511 |
aaaaattcatagttttatgatgcttaaaatacatttagaccaaataaataattaaaaccaattctatgaatgtatagaaaggtacaatatccctttcaaa |
9994412 |
T |
|
| Q |
319 |
nnnnnnnnnnn-gtacaatacaataacaatgtttttaaccatgaaatcatattgtaatttttcatttattttacagttgataaattctctcatgttcctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9994411 |
aaaaaaaaaaaagtacaatacaataacaatgtttttaaccatgaaatcatattgtattttttcatttattttacagttgataaattctctcatgttcctt |
9994312 |
T |
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| Q |
418 |
ttcaacaaactaaacaaacaacgtcaagtttgggagcatatgtgaacaaggtgcggcgtacaactttgctatgattgaaagttgtcgattattccattta |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9994311 |
ttcaacaaactaaacaaacaacgtcaagtttgggagcatatgtgaacaaggtgcggcgtacaactttgctatgattgaaagttgtcaattattccattta |
9994212 |
T |
|
| Q |
518 |
tttctccatattctgctcatttgctatgattgccatagtaatgtcattcatggattgcattctgatcactcaaatatgtttctatggttgcatatcctca |
617 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9994211 |
tttctccacattctgctcatttgctatgattggcatagtagtgtcattcatggattgcattctgatcactcaaatatgtttctatggttgcatatcctca |
9994112 |
T |
|
| Q |
618 |
ctttgaacgtgcatctcaaagttccatacataagcgcgcttcatcaatgaccttgcgaatccgatgtaccagcaaggacaacacgacgtttccacgatca |
717 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9994111 |
ctttgaacgtgcatctcaaagttccatacataagcgcgcttcatcaatgaccttgcgaatccgatgtaccagcaaggacaacacgacgtttccacgatca |
9994012 |
T |
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| Q |
718 |
cattctgaaatccaaaacactatatt |
743 |
Q |
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| T |
9994011 |
cattctgaaatccaaaacactatatt |
9993986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 120 - 289
Target Start/End: Complemental strand, 9989536 - 9989373
Alignment:
| Q |
120 |
aaagttgattctacatgaattttatttaattgtagtagtattttttattgtttattctccatagaaactaaaacgaaataa-gttaatgtgaataaaact |
218 |
Q |
| |
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| T |
9989536 |
aaagttgattctacatgaattttatttaattgtagtagtattttttatt-------ctccatagaaactaaaacgaaataaagttaatgtgactaaaact |
9989444 |
T |
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| Q |
219 |
aaaaattcatagttttatgatgcttaaaatacatttagaccaaataaataattaaaaccaattctatgaat |
289 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
9989443 |
aaaaagtcatagttttatgatgcttaaaatacatttaaaccaaataaataattcaaaccaattctatgaat |
9989373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 492 - 594
Target Start/End: Complemental strand, 9989131 - 9989033
Alignment:
| Q |
492 |
ttgaaagttgtcgattattccatttatttctccatattctgctcatttgctatgattgccatagtaatgtcattcatggattgcattctgatcactcaaa |
591 |
Q |
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| T |
9989131 |
ttgaaagttgtcgattattccatttatttctccatattctgctcatttgctctgattggcatagtagt----atcatggattgcatcctgatcactcaaa |
9989036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 388 - 476
Target Start/End: Complemental strand, 9989250 - 9989163
Alignment:
| Q |
388 |
ttacagttgataaattctctcatgttccttttcaacaaactaaacaaacaacgtcaagtttgggagcatatgtgaacaaggtgcggcgt |
476 |
Q |
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| T |
9989250 |
ttacggttgataaattctctcattttccttttcaacaaactaaac-aacaacgtcaagtttgggagcatatgcgaacatggtgcggcgt |
9989163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 674 - 737
Target Start/End: Complemental strand, 39623581 - 39623518
Alignment:
| Q |
674 |
gaatccgatgtaccagcaaggacaacacgacgtttccacgatcacattctgaaatccaaaacac |
737 |
Q |
| |
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||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| |
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| T |
39623581 |
gaatccgatgtaccagcaaggacaacacggcatttccacaatcacattctgaaatccaaaacac |
39623518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 3587454 - 3587547
Alignment:
| Q |
21 |
ttctatatccgttgcatggctagatctattgattccgtcattacgatactttattattcctccttttcttcttgcaacaataatcattgtaaag |
114 |
Q |
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||||||||||| ||||||||||||||| | |||| || ||||| | ||| ||||||| ||| || |||||||||||||||||||||||||||| |
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| T |
3587454 |
ttctatatccgctgcatggctagatctgtcgattttgttattacaaaactgtattatttctctttctcttcttgcaacaataatcattgtaaag |
3587547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 5670830 - 5670782
Alignment:
| Q |
67 |
tactttattattcctccttttcttcttgcaacaataatcattgtaaagg |
115 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
5670830 |
tactttattatttctcctcctcttcttgcaacaataatcattgtaaagg |
5670782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 5680323 - 5680275
Alignment:
| Q |
67 |
tactttattattcctccttttcttcttgcaacaataatcattgtaaagg |
115 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
5680323 |
tactttattatttctcctcctcttcttgcaacaataatcattgtaaagg |
5680275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 5694475 - 5694427
Alignment:
| Q |
67 |
tactttattattcctccttttcttcttgcaacaataatcattgtaaagg |
115 |
Q |
| |
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||||| |||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
5694475 |
tacttgattatttctcctcctcttcttgcaacaataatcattgtaaagg |
5694427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 450
Target Start/End: Complemental strand, 5792132 - 5792095
Alignment:
| Q |
413 |
tccttttcaacaaactaaacaaacaacgtcaagtttgg |
450 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||| |
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| T |
5792132 |
tccttttccacaaactaaacaaacaacgttaagtttgg |
5792095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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