View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12930_high_21 (Length: 255)
Name: NF12930_high_21
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 24567115 - 24567342
Alignment:
| Q |
11 |
agattattctatgatttatgggtagctttaagagtcaataaaagttcagctctaaatttaatgctgctctagtctaaagtttcatggctatcagcagtta |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24567115 |
agattcttctatgatttatgggtagctttaagagtcaataaaagttcagctctaaatttaatgctgctctagtctaaagtttcatggctatcagcactta |
24567214 |
T |
|
| Q |
111 |
cctatgcacattatttgtgaagaaaagtttatataaaagttggcacaatctttctggtgatcctttaacttggtctaaaataaattatatatgtacacga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24567215 |
cctatgcacattatttgtgaagaaaagtttatataaaagttggcacaatctttctggtgatcctttaacttggtctaaaataaattatatatgtacacga |
24567314 |
T |
|
| Q |
211 |
ttgattcttcatgtcttctctttttctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
24567315 |
ttgattcttcatgtcttctctttttctt |
24567342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University