View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12930_high_4 (Length: 706)
Name: NF12930_high_4
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 632; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 21 - 696
Target Start/End: Complemental strand, 3698735 - 3698060
Alignment:
| Q |
21 |
ccaacaatccaaacacctctgagaagtcctccattattagccctttgaaaaagtgctgatttttctaacacttgatcatcaggcattgaaccaggccaac |
120 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698735 |
ccaacaatccaaacacctttaagaagtcctccattattagccctttgaaaaagtgctgatttttctaacacttgatcatcaggcattgaaccaggccaac |
3698636 |
T |
|
| Q |
121 |
caatacaaacatcagtgaaaacaccatttgtatcaacaactccttgaacagttattgaatatgaagtcttttgattcctctcagtatgtctcttgttaaa |
220 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698635 |
caatgcaaacatcagtgaaaacaccatttgtatcaacaactccttgaacagttattgaatatgaagtcttttgattcctctcagtatgtctcttgttaaa |
3698536 |
T |
|
| Q |
221 |
ataatcagcaacactaatcttaggagctataattggaacatgtgatgtatacatggaccctacaacatttggaatacctgacataccctcaaactcattt |
320 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698535 |
ataagcagcaacactaatcttaggagctataattggaacatgtgatgtatacatggaccctacaacatttggaatacctgacataccctcaaactcattt |
3698436 |
T |
|
| Q |
321 |
ttagtttttctcaaagaagtttcattaggccattgaagatacttaggcataagaacagttttaatagcagtgcaaacttcaagaacaagtttatgacaag |
420 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698435 |
ttaatttttctcaaagaagtttcattaggccattgaagatacttaggcataagaacagttttaatagcagtgcaaacttcaagaacaagtttatgacaag |
3698336 |
T |
|
| Q |
421 |
ttgatatacctaaaccaaacctttttgaaacaatgctaagaggatcacctgttgctagtctccatagacaaacagctactctttgtctcactggaattgc |
520 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698335 |
ttgatatacctaaaccaaacctttttgaaacaattctaagaggatcacctgttgctaatctccatagacaaacagctactctttgtctcactggaattgc |
3698236 |
T |
|
| Q |
521 |
agttctcaaagttgtatcttctttcacaattgctgaattcagttcttcacaaatcaaatcaaaagttgattttcccattctaaaagctttcttaaactca |
620 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3698235 |
agttctcaaagttgtatcttctttcacaattgctgaattcaattcttcacaaatcaaatcaaaagttgattttcccattctaaatgctttcttaaactca |
3698136 |
T |
|
| Q |
621 |
tcttcaggaaaatcttctttattacattcatcccaccatgctcctgaacgatccttcacccatagccttctctgtg |
696 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3698135 |
tcttcaggaaaatcttctttgttacattcatcccaccatgctcctgaacgatccttcacccaaagccttctctgtg |
3698060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 17 - 696
Target Start/End: Complemental strand, 3702427 - 3701748
Alignment:
| Q |
17 |
actaccaacaatccaaacacctctgagaagtcctccattattagccctttgaaaaagtgctgatttttctaacacttgatcatcaggcattgaaccaggc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702427 |
actaccaacaatccaaacacctctgagaagtcctccattattagccctttgaaaaagtgctgatttttctaacacttgatcatcaggcattgaaccaggc |
3702328 |
T |
|
| Q |
117 |
caaccaatacaaacatcagtgaaaacaccatttgtatcaacaactccttgaacagttattgaatatgaagtcttttgattcctctcagtatgtctcttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3702327 |
caaccaatacaaacatcagtgaaaacaccatttgtatcaacaacaccttgaacagttattgaatatgaagtcttttgattcctctcagtatgtcttctgt |
3702228 |
T |
|
| Q |
217 |
taaaataatcagcaacactaatcttaggagctataattggaacatgtgatgtatacatggaccctacaacatttggaatacctgacataccctcaaactc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702227 |
taaaataatcagcaacactaatcttaggagctatgattggaacatgtgatgtatacatggaccctacaacatttggaatacctgacataccctcaaactc |
3702128 |
T |
|
| Q |
317 |
atttttagtttttctcaaagaagtttcattaggccattgaagatacttaggcataagaacagttttaatagcagtgcaaacttcaagaacaagtttatga |
416 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3702127 |
attcttaatttttctcaaagaagtttcattaggccattgaagatacttaggcataagaacagttttaatagcagtgcaaacttcaagaacaagtttatga |
3702028 |
T |
|
| Q |
417 |
caagttgatatacctaaaccaaacctttttgaaacaatgctaagaggatcacctgttgctagtctccatagacaaacagctactctttgtctcactggaa |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3702027 |
caagttgatatacctaaaccaaacctttttgaaacaatgctaagaggatcacctgttgctaatctccatagacaaacagctactctttgtctcactggaa |
3701928 |
T |
|
| Q |
517 |
ttgcagttctcaaagttgtatcttctttcacaattgctgaattcagttcttcacaaatcaaatcaaaagttgattttcccattctaaaagctttcttaaa |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3701927 |
ttgcagttctcaaagttgtatcttctttcacaattgctgaattcaatttttcacaaataaaatcaaaagttgattttcccattctaaaagctttcttaaa |
3701828 |
T |
|
| Q |
617 |
ctcatcttcaggaaaatcttctttattacattcatcccaccatgctcctgaacgatccttcacccatagccttctctgtg |
696 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
3701827 |
ctcatcttcaggaaaatcttctttattacattcatcccaccatgccccggaacgatccttcacccatagccttctctgtg |
3701748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 493
Target Start/End: Original strand, 52251370 - 52251470
Alignment:
| Q |
393 |
caaacttcaagaacaagtttatgacaagttgatatacctaaaccaaacctttttgaaacaatgctaagaggatcacctgttgctagtctccatagacaaa |
492 |
Q |
| |
|
||||| |||||||| || |||||||| || |||||||| ||||| ||||| |||||||| | || ||||||||||| || || |||||||| | ||||| |
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|
| T |
52251370 |
caaacctcaagaaccagcttatgacaggtggatatacccaaaccgaacctctttgaaaccagccttagaggatcaccggtggcgagtctccagatacaaa |
52251469 |
T |
|
| Q |
493 |
c |
493 |
Q |
| |
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| |
|
|
| T |
52251470 |
c |
52251470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 361 - 501
Target Start/End: Original strand, 52262983 - 52263123
Alignment:
| Q |
361 |
acttaggcataagaacagttttaatagcagtgcaaacttcaagaacaagtttatgacaagttgatatacctaaaccaaacctttttgaaacaatgctaag |
460 |
Q |
| |
|
|||| ||||||||||| ||||| || ||| |||||| || ||||| || || ||||| || |||| ||| |||||||| | || |||||||| ||| |
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| T |
52262983 |
actttggcataagaacggtttttatttcagagcaaacatctagaacgagcttgtgacatgtggataaacccaaaccaaatcgttctgaaacaagcctata |
52263082 |
T |
|
| Q |
461 |
aggatcacctgttgctagtctccatagacaaacagctactc |
501 |
Q |
| |
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|||||||||||| || |||||||| | |||| | ||||||| |
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| T |
52263083 |
aggatcacctgtggcaagtctccaaatacaagccgctactc |
52263123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 17602581 - 17602503
Alignment:
| Q |
103 |
gcattgaaccaggccaaccaatacaaacatcagtgaaaacaccatttgtatcaacaactccttgaacagttattgaata |
181 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| |||||||| || ||| || || ||||||||||||| |||||| |
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|
| T |
17602581 |
gcattgagccaggccaacctatacacacatcagtaaaaacacctttactatttaccacaccttgaacagttactgaata |
17602503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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