View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12930_low_11 (Length: 443)
Name: NF12930_low_11
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 424
Target Start/End: Complemental strand, 49768232 - 49767825
Alignment:
| Q |
11 |
catcatcatcccgtcttgacgatcctgaaaatacatcaactgcaccacttctccatatgctggagctccctacgcgtccactcgccactctcagttcacc |
110 |
Q |
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| T |
49768232 |
catcatcatcccttcttgacgatcctgaaaatacatcaactgcaccacttctccatatgctggagctccctacgcgtccactcgccactctcagttcacc |
49768133 |
T |
|
| Q |
111 |
accttccatgtatgtattattttgtattatgtattctgtttagagtcaccaacttcttctttatagcgttacaaatttctacgttgttaaataagtttga |
210 |
Q |
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| T |
49768132 |
accttccatgtatgtattattttgtattatgtactctgtttagagtcaccaacttcttatttatagcgttacaaatttctacgtcgttaaataagtttga |
49768033 |
T |
|
| Q |
211 |
agtaatcaattattagaataatcaattgattactagtacttcagacatgaacttcatatnnnnnnntagacagtagacattatgtttattgttatattct |
310 |
Q |
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||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || |
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| T |
49768032 |
agtaatcaattattagaataaacaa-----tgctagtacttcagacatgaacttcatat-aaaaaatagacagtagacattatgtttagtgttatatcct |
49767939 |
T |
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| Q |
311 |
cagcatatttgtcttgtatcacatttttattcaattcaatcaaatnnnnnnntgaggtgatgagattgtatgcaccatgtctcagttattttaagtcccc |
410 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
49767938 |
cagcatatttgttttgtatcaaatttttattcaattcaatcaaataataaaatgaggtgatgtgattgtatgcaccatgtctcagttatcgtaagtcccc |
49767839 |
T |
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| Q |
411 |
ttttcccgccacct |
424 |
Q |
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| T |
49767838 |
ttttcccgccacct |
49767825 |
T |
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