View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12930_low_12 (Length: 443)
Name: NF12930_low_12
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 13881238 - 13881636
Alignment:
| Q |
18 |
caatactatcataaatttagtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaatgatagtcaatc |
117 |
Q |
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| T |
13881238 |
caatactatcataaatttagtaacacaagctggttttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaatgatagtcaatc |
13881337 |
T |
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| Q |
118 |
taaacgactattccacccataggttaacatgtttgttcagtaacacaagttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgt |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881338 |
taaacgactattccaccaataggttaacatgtttgttcagtaacacaagttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgt |
13881437 |
T |
|
| Q |
218 |
tacaaaacatataacactacttaaaactccaggagcatatttaaataggcaagagtcaaacttcaaatgnnnnnnnnnnnnnnnnncttgcatattcaag |
317 |
Q |
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| T |
13881438 |
tacaaaacatataacactacttaaaactccaggagcatatttaaataggcaagagtcaaacttcaaatgaaaaaaggaaaagaaaacttgcatat----- |
13881532 |
T |
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| Q |
318 |
catattcaatacgatatatgttctaatcgtgtagaacacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcatatgc |
417 |
Q |
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| T |
13881533 |
-----tcaatacgatatatgttctaatcgtgtagaacacaagcattttcgtggtaaactatatcgacaaacttttcaagttttattga-ttttcatatgc |
13881626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 13254689 - 13254759
Alignment:
| Q |
63 |
atgagaccatctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgactattccac |
133 |
Q |
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| T |
13254689 |
atgagaccatctgcttccaatatctgaactttctgcaatccaatgatagtcgacctaaatgactattccac |
13254759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 318 - 427
Target Start/End: Original strand, 16022434 - 16022546
Alignment:
| Q |
318 |
catattcaatacgatatatgttctaatcgtgtagaa---cacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcata |
414 |
Q |
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|||||||||||||||||||||||| ||| || |||| ||| ||||||| ||| ||||||||||||||||||||| || ||||| ||||||| ||||| |
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| T |
16022434 |
catattcaatacgatatatgttctcatcatgaagaagaacacgagcattttcgtgataaactatatcgacaaactttccaggttttcttgatttctcata |
16022533 |
T |
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| Q |
415 |
tgcatatagttga |
427 |
Q |
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| T |
16022534 |
tgcatatagttga |
16022546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 427
Target Start/End: Complemental strand, 14389688 - 14389578
Alignment:
| Q |
317 |
gcatattcaatacgatatatgttctaatcgtgtagaacacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcatatg |
416 |
Q |
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||||||||||||| |||||||||| ||| || ||||||| || |||| ||| ||||||||||| ||||||||| |||| ||| ||||||| ||| ||| |
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| T |
14389688 |
gcatattcaatacagtatatgttctcatcatgaagaacacgagaattttcgtgataaactatatcaacaaactttccaagctttcttgatttgtcaaatg |
14389589 |
T |
|
| Q |
417 |
catatagttga |
427 |
Q |
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||||||||||| |
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| T |
14389588 |
catatagttga |
14389578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 16022307 - 16022378
Alignment:
| Q |
165 |
agttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacacta |
236 |
Q |
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| T |
16022307 |
agttgaatagacagtgtctttggttttggtgactgcaatgaaataaaccatgttacagaacatataacacta |
16022378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 14389836 - 14389758
Alignment:
| Q |
167 |
ttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacactacttaaaact |
245 |
Q |
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| T |
14389836 |
ttgaatagaaagtgtctttggttttggtgactgcaataaaataaaccatgttacaaaacatataacactccttaaaact |
14389758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 14367184 - 14367070
Alignment:
| Q |
36 |
agtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatcc-aatgatagtcaatctaaacgactattccacc |
134 |
Q |
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|||||||||||||| |||||| ||| ||||||||||||||| ||||||||| ||||| ||| || || ||| || |||||||||| ||||||||| |
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| T |
14367184 |
agtaacacaagctggttttatattagaatgagaccatctgctcccaatatctgaacttgctgtaaaccaaatagtaatcaatctaaattcctattccact |
14367085 |
T |
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| Q |
135 |
cataggttaacatgt |
149 |
Q |
| |
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| T |
14367084 |
cacaggttaacatgt |
14367070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 13878561 - 13878638
Alignment:
| Q |
71 |
atctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgactattccacccataggttaacatg |
148 |
Q |
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||||||| ||||||||||||||| |||||| ||||||||| |||||||| | |||||| || || ||||||||||| |
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| T |
13878561 |
atctgctcccaatatcttaacttgctgcaaaccaatgataatcaatctatatacctattcaactcacaggttaacatg |
13878638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 13856744 - 13856788
Alignment:
| Q |
204 |
gaaataaaccatgttacaaaacatataacactacttaaaactcca |
248 |
Q |
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| T |
13856744 |
gaaataaaccatgttaccaaacatataacactccttaaaattcca |
13856788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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