View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12930_low_13 (Length: 404)
Name: NF12930_low_13
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 21 - 389
Target Start/End: Complemental strand, 48364004 - 48363636
Alignment:
| Q |
21 |
aagccctaaactccaaatatgtatccttttcagttcctcaattgttaagctagccaacaagacacccacaacgcacacaaacatgaacaattcgatcaaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48364004 |
aagccctaaactccaaatatgtatccttttcagttcctcaattgttaagctagccaacaagacacccacaacgcacacaaacatgaacaattcgatcaaa |
48363905 |
T |
|
| Q |
121 |
accttagtcgctagtctcttatgctgggatttactaaattcaactttcctataaatgacttcgtcaggatcttcaccggaagaagaacctggagatgccc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48363904 |
accttagtcgctagtctcttatgctgggatttactaaattcaactttcctataaatgacttcgtcaggatcttcaccggaagaagaacctggagatgccc |
48363805 |
T |
|
| Q |
221 |
ttaaaggtgttctaggtgaataagagttcctataaggtgaagtaacagctgattgttcttgcgaatttggacaagtaacattctcttctaaaagggtctc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48363804 |
ttaaaggtgttctaggtgaataagagttcctataaggtgaagtaacagctgattgttcttgcgaatttggacaagtaacattctcttctaaaagggtctc |
48363705 |
T |
|
| Q |
321 |
atcaatagggtaagattgttctacaaaccttgatttgggcttagaatacacagatcttcggagagtttt |
389 |
Q |
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| T |
48363704 |
atcaatagggtaagattgttctacaaaccttgatttgggtttagaatacacagatcttcggagagtttt |
48363636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 246 - 378
Target Start/End: Complemental strand, 48383323 - 48383191
Alignment:
| Q |
246 |
gttcctataaggtgaagtaacagctgattgttcttgcgaatttggacaagtaacattctcttctaaaagggtctcatcaatagggtaagattgttctaca |
345 |
Q |
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| T |
48383323 |
gttcctataaggtgaactaacagctaaatgttcttgcaaatttgaataagtaacattctcttctaaaagggtttcatcaataggataaggttgttcacca |
48383224 |
T |
|
| Q |
346 |
aaccttgatttgggcttagaatacacagatctt |
378 |
Q |
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|| ||||||||||||||||||||||| |||||| |
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| T |
48383223 |
aatcttgatttgggcttagaatacactgatctt |
48383191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 48398524 - 48398736
Alignment:
| Q |
21 |
aagccctaaactccaaatatgtatccttttcagttcctcaattgttaagctagccaacaagacacccacaacgcacacaaacatgaacaattcgatcaaa |
120 |
Q |
| |
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|||||| ||||||||||| | ||||||| |||||||||| |||||| |||||||||||| |||| | ||||||||||| |||||| ||||||||| |
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| T |
48398524 |
aagccccaaactccaaatctccgtcctttttagttcctcaactgttaaactagccaacaagctacccgtgatgcacacaaacacgaacaactcgatcaaa |
48398623 |
T |
|
| Q |
121 |
accttagtcgctagtctcttatgctgggatttactaaattcaactttcctataaatgacttcgtcaggatcttcaccggaagaagaacctggagatgccc |
220 |
Q |
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|||||||| | |||||||||| ||| | ||||||||||||||||||| | ||||||| ||| |||||||| || || || || ||||||||||| | |
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| T |
48398624 |
accttagtagttagtctcttacgcttgcctttactaaattcaactttcttgtaaatgatttcatcaggatcctcgcc---agcaggacctggagatgtca |
48398720 |
T |
|
| Q |
221 |
ttaaaggtgttctagg |
236 |
Q |
| |
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| |||||||||||||| |
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| T |
48398721 |
tcaaaggtgttctagg |
48398736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 251 - 365
Target Start/End: Original strand, 48398808 - 48398922
Alignment:
| Q |
251 |
tataaggtgaagtaacagctgattgttcttgcgaatttggacaagtaacattctcttctaaaagggtctcatcaatagggtaagattgttctacaaacct |
350 |
Q |
| |
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|||| ||||||||||||||| || |||||| |||||| | ||||||||||||||||||||||||| ||||||||||||||| |||||| |||| || |
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| T |
48398808 |
tatatggtgaagtaacagctatctgatcttgcaaatttgaagaagtaacattctcttctaaaagggttccatcaatagggtaaggttgttcaccaaatct |
48398907 |
T |
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| Q |
351 |
tgatttgggcttaga |
365 |
Q |
| |
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||||||||||||||| |
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| T |
48398908 |
tgatttgggcttaga |
48398922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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