View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12930_low_16 (Length: 352)

Name: NF12930_low_16
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12930_low_16
NF12930_low_16
[»] chr7 (13 HSPs)
chr7 (11-335)||(11820422-11820746)
chr7 (34-273)||(11810870-11811109)
chr7 (11-270)||(11809236-11809495)
chr7 (11-134)||(11812604-11812726)
chr7 (11-273)||(11814353-11814616)
chr7 (66-262)||(27993901-27994101)
chr7 (29-153)||(11816926-11817050)
chr7 (12-273)||(11815474-11815727)
chr7 (66-272)||(9729832-9730035)
chr7 (72-253)||(48598314-48598495)
chr7 (296-330)||(11809176-11809210)
chr7 (226-264)||(11812533-11812571)
chr7 (66-208)||(32716533-32716676)
[»] chr1 (11 HSPs)
chr1 (50-255)||(3387638-3387844)
chr1 (9-270)||(16426367-16426637)
chr1 (66-273)||(50127116-50127323)
chr1 (51-272)||(3954934-3955155)
chr1 (66-232)||(48632578-48632746)
chr1 (66-166)||(9149060-9149161)
chr1 (66-115)||(125176-125225)
chr1 (66-166)||(7021634-7021735)
chr1 (67-166)||(18476506-18476607)
chr1 (66-166)||(23431866-23431967)
chr1 (175-232)||(126360-126419)
[»] chr2 (15 HSPs)
chr2 (66-272)||(17651258-17651465)
chr2 (12-115)||(41848957-41849067)
chr2 (71-228)||(44649966-44650126)
chr2 (85-270)||(4748037-4748224)
chr2 (67-166)||(9929631-9929731)
chr2 (189-273)||(18724691-18724775)
chr2 (67-166)||(26576061-26576161)
chr2 (67-166)||(32200885-32200985)
chr2 (84-166)||(13037325-13037408)
chr2 (11-52)||(18724895-18724936)
chr2 (67-163)||(34409647-34409743)
chr2 (14-165)||(38783673-38783832)
chr2 (55-115)||(16661291-16661351)
chr2 (67-164)||(27004035-27004133)
chr2 (176-232)||(34409577-34409633)
[»] chr8 (13 HSPs)
chr8 (50-255)||(18393524-18393730)
chr8 (56-240)||(27401812-27401997)
chr8 (50-273)||(13097427-13097645)
chr8 (79-270)||(2889699-2889884)
chr8 (94-267)||(1226083-1226258)
chr8 (76-270)||(2875344-2875532)
chr8 (78-270)||(3159842-3160028)
chr8 (11-115)||(28867225-28867336)
chr8 (84-166)||(3145256-3145339)
chr8 (76-166)||(2796200-2796294)
chr8 (23-115)||(28869800-28869899)
chr8 (66-166)||(15850518-15850619)
chr8 (87-166)||(28421061-28421141)
[»] scaffold0012 (1 HSPs)
scaffold0012 (50-273)||(209174-209396)
[»] scaffold1723 (1 HSPs)
scaffold1723 (15-272)||(294-557)
[»] chr6 (9 HSPs)
chr6 (66-246)||(33234836-33235014)
chr6 (15-268)||(2602031-2602289)
chr6 (186-273)||(17261714-17261801)
chr6 (67-232)||(12843903-12844069)
chr6 (176-231)||(57106-57162)
chr6 (67-166)||(34708928-34709028)
chr6 (66-114)||(6821025-6821073)
chr6 (67-166)||(19294385-19294482)
chr6 (67-166)||(17540017-17540117)
[»] chr3 (3 HSPs)
chr3 (183-273)||(42718554-42718643)
chr3 (66-166)||(21408922-21409023)
chr3 (66-166)||(11410682-11410783)
[»] chr5 (5 HSPs)
chr5 (66-207)||(32676657-32676797)
chr5 (84-228)||(38989252-38989395)
chr5 (55-115)||(4112005-4112065)
chr5 (66-131)||(40837805-40837871)
chr5 (12-52)||(41815796-41815836)
[»] chr4 (7 HSPs)
chr4 (66-232)||(2641136-2641307)
chr4 (87-162)||(54305676-54305752)
chr4 (11-109)||(32593730-32593835)
chr4 (84-270)||(44507705-44507893)
chr4 (216-263)||(32593973-32594018)
chr4 (87-166)||(40289214-40289294)
chr4 (66-166)||(17732772-17732874)
[»] scaffold0325 (1 HSPs)
scaffold0325 (66-115)||(12877-12926)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 11820746 - 11820422
Alignment:
Q  11 cataggacaccgacacaactacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattg 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||     
T  11820746 cataggacaccgacaccactacctatatattaatttatttatcaaaattgcgaagcaaaatacatacatatgcatctaacttgagcaatttatttcattc 11820647  T
Q  111 aaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacc 210  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  11820646 aaaaagttctatgacaacatacaatagcatttgagctttatttatttatctactattaaaaattttaaaaatgttgtaatcatctttaatgtctataacc 11820547  T
Q  211 cttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagagnnnnnnnntaagacannnnnnngagttgtctgacaca 310  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||        |||||||       |||||||||||||||    
T  11820546 cttcgttgatcaacatttctcacacatctttaactcttgaatctactgtgtgtggaagcagagaaaaaaaataagacattattttgagttgtctgacaca 11820447  T
Q  311 cctcaaataagtgttatatagatgt 335  Q
    |||||||||||||||||||||||||    
T  11820446 cctcaaataagtgttatatagatgt 11820422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 34 - 273
Target Start/End: Complemental strand, 11811109 - 11810870
Alignment:
Q  34 tatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaatttctatgacaagataca 133  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||| |||||||| | | ||||||||||    
T  11811109 tatataataatttatttatcaaaattgagaagcaaaatacatacatatgcctctaacttgagcaatttatttcattaaaaaatttatctaacaagataca 11811010  T
Q  134 atagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcac 233  Q
    |||  |||||| ||||||| ||||||||||| |       |||||||| |  || ||||| ||| |||||||||| || ||| |||||||||||||||||    
T  11811009 ataatatttgacctttattaatttatctactgtcataaaatttaaaaacgccgttatcattttttatgtctataaaccctcgctgatcaacatttctcac 11810910  T
Q  234 atatctttaactcctgaatctactgtgtgtggaagcagag 273  Q
    |   ||||||||| |||||||||| ||||||||| |||||    
T  11810909 aaggctttaactcttgaatctactttgtgtggaaacagag 11810870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 11809495 - 11809236
Alignment:
Q  11 cataggacaccgacacaactacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattg 110  Q
    |||| |||||||||||  ||||||||||||||||||||||||| |||||  |||||||||||||||||||||  |||||||||||||||||||||||||     
T  11809495 cataagacaccgacactgctacctatatattaatttatttatctaaatttagaagcaaaatacatacatatgcttctaacttgagcaatttatttcatta 11809396  T
Q  111 aaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacc 210  Q
    |||||||| ||| |||||||||||||| |||||  |||||||  || ||||||  |       |||||||| ||||||||||  |||||||||||| |||    
T  11809395 aaaaatttatataacaagatacaatagtatttggcctttattacttcatctaccgtcaaaaaatttaaaaaggttgtaatcaaatttaatgtctatgacc 11809296  T
Q  211 cttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagca 270  Q
    | || ||||| || |  | ||||    ||||||||| |||||||||||||||| ||||||    
T  11809295 cctcattgataaaaaaatttcactaggctttaactcttgaatctactgtgtgtagaagca 11809236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 11812726 - 11812604
Alignment:
Q  11 cataggacaccgacacaactacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattg 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| |||||||||||||||| |||||| |||||||||||||||||||     
T  11812726 cataggacaccgacacagctacctatatattaatttatttatctaaattgggaagaaaaatacatacatatgcatctaatttgagcaatttatttcatt- 11812628  T
Q  111 aaaaatttctatgacaagatacaa 134  Q
    |||||||||||| |||||||||||    
T  11812627 aaaaatttctataacaagatacaa 11812604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 11814616 - 11814353
Alignment:
Q  11 cataggacaccgacacaactacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattg 110  Q
    ||||||||||||||||   |||||||||||||| | ||||||| |||||| ||||||||||||||| ||||| ||||||  |||||||||||||||||      
T  11814616 cataggacaccgacactgttacctatatattaagtgatttatctaaattgagaagcaaaatacataaatatgcatctaatatgagcaatttatttcatga 11814517  T
Q  111 aaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacc 210  Q
    ||| |||||  | ||| ||||||| |  |||||| || ||||  ||||| ||||||        ||||||||| |||||||| | |||||||||||||||    
T  11814516 aaatatttcattaacacgatacaacaatatttgacctctattattttatatactatcaaaaaaattaaaaatggtgtaatcaacattaatgtctataacc 11814417  T
Q  211 cttcgttgatcaaca-tttctcacatatctttaactcctgaatctactgtgtgtggaagcagag 273  Q
    | ||||||||||| | ||| | ||| ||||||||||| |||||||| |||||||||||||||||    
T  11814416 cctcgttgatcaatattttgttacacatctttaactcttgaatctattgtgtgtggaagcagag 11814353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 262
Target Start/End: Original strand, 27993901 - 27994101
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaa-aaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||||||||| || ||||||||||||||||||||||| || ||| |||||| |||||||||||||||| |||| ||||||||||  ||||||     
T  27993901 caaaatacatacatatgcatttaacttgagcaatttatttcattaaataaagttctataacaagatacaatagcaattgatctttatttatccatctacc 27994000  T
Q  165 atnnnnnnntttaaaaatg---ttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgt 261  Q
    ||       ||||||||||   ||||||| | ||||||||||||||| || || ||||| || |||||||||| ||||||||||| ||||||||||||||    
T  27994001 atcgaaaaatttaaaaatgcatttgtaataaactttaatgtctataaaccctccttgataaatatttctcacacatctttaactcttgaatctactgtgt 27994100  T
Q  262 g 262  Q
    |    
T  27994101 g 27994101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 11817050 - 11816926
Alignment:
Q  29 ctacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaatttctatgacaag 128  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||| |||||||||||||||||| |||||||| ||| |||||    
T  11817050 ctacctatatattaatttatttatctaaattgagaagcaaaatacatacataagcatctaacatgagcaatttatttcattaaaaaatttatataacaag 11816951  T
Q  129 atacaatagcatttgagctttattt 153  Q
    ||||||| | |||||| ||||||||    
T  11816950 atacaatcgtatttgacctttattt 11816926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 11815727 - 11815474
Alignment:
Q  12 ataggacaccgacacaactacctatatattaatttatttatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattga 111  Q
    ||||||||| |||||  ||| |||| |||||||||||||| | |||||| |||| |||||||| ||||||| |||||      |||||||||||| || |    
T  11815727 ataggacactgacactgctatctatttattaatttatttacctaaattgggaaggaaaatacaaacatatgcatcta------gcaatttatttctttaa 11815634  T
Q  112 aaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataaccc 211  Q
    |||| |||||| ||||||||||| |  ||||||  ||||||| ||||||||||||        ||||||| |||||||||| ||||||| |||||||| |    
T  11815633 aaaagttctataacaagatacaacaatatttgaaatttattt-tttatctactatctaaataattaaaaaagttgtaatcaactttaatatctataactc 11815535  T
Q  212 ttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagag 273  Q
    | ||||||||||||||||||| | |||| |||||| ||||||||||| |||| |||| ||||    
T  11815534 t-cgttgatcaacatttctcaaacatctctaactcttgaatctactgcgtgtagaagtagag 11815474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 272
Target Start/End: Complemental strand, 9730035 - 9729832
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||| ||||| |||  ||||||||||||||||||||||||| |||||| |||||| | ||| |    ||| |||||  ||||||||||  | |||||    
T  9730035 caaaatatatacacatgcttctaacttgagcaatttatttcattaaaaaatgttctataataaggt----tagtatttggactttatttatccacctact 9729940  T
Q  165 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtg 264  Q
    ||       ||||||   |||||||||| |||||||||  | |||| ||||||||||||||||||||||| ||||||||||| |||||| |||  |||||    
T  9729939 atcgaaaaatttaaatgcgttgtaatcaactttaatgtaaaaaacctttcgttgatcaacatttctcacacatctttaactcttgaatccactccgtgtg 9729840  T
Q  265 gaagcaga 272  Q
     |||||||    
T  9729839 aaagcaga 9729832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 72 - 253
Target Start/End: Original strand, 48598314 - 48598495
Alignment:
Q  72 acatacatatgaatctaacttgagcaatttatttcattgaaa-aatttctatgacaagatacaatagcatttgagctttatttatttatcta-ctatnnn 169  Q
    ||||||||||| ||||||||||| ||||| |||||||| ||| ||||| ||| ||| |||||||||| |||||| ||||||||||  | |||  |||       
T  48598314 acatacatatgcatctaacttgaacaattcatttcattaaaataatttatataacacgatacaatagtatttgacctttatttatcca-ctatatatcaa 48598412  T
Q  170 nnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatc 253  Q
        || ||||| ||||||| || ||||||| ||||| |||| || ||||||||||||||||||| ||||||||||| ||||||    
T  48598413 aaaattaaaaaacgttgtaaccaactttaatatctatgaccc-tcattgatcaacatttctcacacatctttaactcttgaatc 48598495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 330
Target Start/End: Complemental strand, 11809210 - 11809176
Alignment:
Q  296 gagttgtctgacacacctcaaataagtgttatata 330  Q
    |||||||||||||||||||| ||||||||||||||    
T  11809210 gagttgtctgacacacctcatataagtgttatata 11809176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 11812571 - 11812533
Alignment:
Q  226 tttctcacatatctttaactcctgaatctactgtgtgtg 264  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  11812571 tttctcacacatctttaactcttgaatctactgtgtgtg 11812533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 32716676 - 32716533
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||| || |  |||||||||||  ||||| ||| ||| |||||  |||||  |||||||||||||| |||||| ||||||||||| ||| |||    
T  32716676 caaaatacatatatgtatatctaacttgaataatttgttttattaaaaaaagttctaaaacaagatacaatagtatttgatctttatttattcatccact 32716577  T
Q  165 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataa 208  Q
    ||        ||||||||| || |||||  ||||||||||||||    
T  32716576 atcgaaaaagttaaaaatggtgcaatcaattttaatgtctataa 32716533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 50 - 255
Target Start/End: Original strand, 3387638 - 3387844
Alignment:
Q  50 tatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctt 148  Q
    |||| |||||| ||| ||||||||||||||||| || |||||||| |||||||||| ||| |||||  |||||| |||||||| ||||| |||||| |||    
T  3387638 tatctaaattgagaatcaaaatacatacatatgcatttaacttgaacaatttattttattaaaaaaagttctataacaagataaaatagtatttgacctt 3387737  T
Q  149 tatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcct 248  Q
    |||||||| |||||| ||       |||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||||| ||||||||||| |    
T  3387738 tatttattcatctaccatcgaaaaatttaaaaacgttgtaatcaactttaatgtctataacccttgattgatcaacatttctcacacatctttaactctt 3387837  T
Q  249 gaatcta 255  Q
    |||||||    
T  3387838 gaatcta 3387844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 16426367 - 16426637
Alignment:
Q  9 agcataggacaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaattt 101  Q
    |||||||||||| |||||  |||||||||||||||||||||||| |||       |||  ||| ||||||||||||||||| ||||||||||||||||||    
T  16426367 agcataggacactgacaccgctacctatatattaatttatttataaaagatataaattaagaatcaaaatacatacatatgcatctaacttgagcaattt 16426466  T
Q  102 atttcattgaaa-aatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaat 200  Q
    | |||||| ||| || |||||| ||||  |||||||| |||||  |||||||||| |||||| |||       ||||||     |||||||| |||||||    
T  16426467 acttcattaaaacaagttctataacaaattacaatagtatttggcctttatttatctatctattattgaaaaatttaaatgcactgtaatcaactttaat 16426566  T
Q  201 gtctataacccttcgttgatcaacatttctcacatatctttaactcc-tgaatctactgtgtgtggaagca 270  Q
    ||||||||| | |||||||||||||||||||||| ||||||||| || |||||||||| ||||| ||||||    
T  16426567 gtctataactcctcgttgatcaacatttctcacacatctttaaccccttgaatctactatgtgtagaagca 16426637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 66 - 273
Target Start/End: Complemental strand, 50127323 - 50127116
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaa-aaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| || ||| |||||| |||||||||||||| |||||  |||||||| || |||||||    
T  50127323 caaaatacatacatatgcatctaacttgaacaatttatttcattaaataaagttctataacaagatacaatagtatttggcctttattt-ttcatctact 50127225  T
Q  165 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtg 264  Q
    ||       ||||||   | || | ||| |||||||||||||||||| ||||| ||||| |||||||| | ||||||||||| |||||||||| || |||    
T  50127224 atcgaaaaatttaaatgcgctgcattcaactttaatgtctataacccctcgttaatcaatatttctcatacatctttaactcttgaatctactctgcgtg 50127125  T
Q  265 gaagcagag 273  Q
    |||||||||    
T  50127124 gaagcagag 50127116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 51 - 272
Target Start/End: Original strand, 3954934 - 3955155
Alignment:
Q  51 atcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagcttt 149  Q
    |||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||  ||||| |||||  | ||||||| || | |||||| ||||    
T  3954934 atcaaaattgagaatcagaatacatacatgtgcatctaacttgagcaatttatttcattaaaaaaagttctaaaataagatacgatcgtatttgaccttt 3955033  T
Q  150 atttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctc-acatatctttaactcct 248  Q
    ||||||  |||||||||         |||||| |||||||||| ||||||| ||| |||||| | ||||||||||||||||| | | |||||||| || |    
T  3955034 atttatccatctactatcgaaaaagctaaaaacgttgtaatcaactttaatctctgtaaccccttgttgatcaacatttctcaagagatctttaa-tctt 3955132  T
Q  249 gaatctactgtgtgtggaagcaga 272  Q
    | |||||| |||||||||||||||    
T  3955133 g-atctaccgtgtgtggaagcaga 3955155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 66 - 232
Target Start/End: Complemental strand, 48632746 - 48632578
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattga-aaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    |||||| |||||||| |||| ||||||||||| ||||||||||||| |||| |||||  ||||||||| |||| |||||| |||||||||||  ||||||    
T  48632746 caaaattcatacataagaatttaacttgagcagtttatttcattgaaaaaagttctaaaacaagataccatagtatttgacctttatttattcttctact 48632647  T
Q  165 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataa-cccttcgttgatcaacatttctca 232  Q
    ||         |||||| |||||||||| ||||||| ||||||| ||| |  |||||||||||||||||    
T  48632646 atcaaaaaagctaaaaacgttgtaatcaactttaatttctataaccccgtaattgatcaacatttctca 48632578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 9149161 - 9149060
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||| ||||||  | ||  ||||||||  |||| |||| | |||||||||||||||||||    
T  9149161 caaaatacatatataagaatctaacttgagaaatttatttcattagaaaaaagtttaaaacaagatatcatagtattttacctttatttatttatctact 9149062  T
Q  165 at 166  Q
    ||    
T  9149061 at 9149060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 125176 - 125225
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 115  Q
    ||||||||||||| | | |||||||||||||||||||||||||| |||||    
T  125176 caaaatacatacacaagtatctaacttgagcaatttatttcattaaaaaa 125225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 7021735 - 7021634
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||| |||||||   |||||||||| ||||||||||| |||||||||  |||||  |||| |||| | |  |||||| |||||||||||||||||||    
T  7021735 caaaatatatacataaacatctaacttgcgcaatttattttattgaaaaaagttctaaaacaaaataccacaagatttgacctttatttatttatctact 7021636  T
Q  165 at 166  Q
    ||    
T  7021635 at 7021634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 18476506 - 18476607
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagc-tttatttatttatctact 164  Q
    |||||||||| ||| | ||||||||||||||| |||||||||| |||||| |||||   |||||||   ||| |||||| | |||||||||| |||||||    
T  18476506 aaaatacatatataagcatctaacttgagcaagttatttcattagaaaaagttctaaagcaagatatcgtagtatttgaccttttatttattcatctact 18476605  T
Q  165 at 166  Q
    ||    
T  18476606 at 18476607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 166
Target Start/End: Original strand, 23431866 - 23431967
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||| ||| | ||||||||||||||| |||||||||| |||||| |||||  |||| |||   ||| ||||||  || ||||||| |||||||    
T  23431866 caaaatacatatataagcatctaacttgagcaagttatttcattagaaaaagttctaaaacaaaatatcgtagtatttgacattcatttattcatctact 23431965  T
Q  165 at 166  Q
    ||    
T  23431966 at 23431967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 126360 - 126419
Alignment:
Q  175 ttaaaaatgttgtaatcatctttaatgtctataacccttcg--ttgatcaacatttctca 232  Q
    ||||||||||| |||||| ||||||||||||||||||  |   |||||||||||||||||    
T  126360 ttaaaaatgttataatcaactttaatgtctataacccccctaattgatcaacatttctca 126419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 66 - 272
Target Start/End: Original strand, 17651258 - 17651465
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaa-aatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  || || |||||| ||||| |||||||  |||||  ||||||||||  |||||||    
T  17651258 caaaatacatacatatgcatctaacttgagcaatttatttcattacaagaagttctataacaagttacaataatatttggcctttatttatccatctact 17651357  T
Q  165 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtg 264  Q
    ||        ||||| | |||||||||| |||||||||||||||||  |||||||||||||||| ||||| | ||||||||| |||||||| ||||||||    
T  17651358 attgaaaaacttaaatacgttgtaatcaactttaatgtctataacctctcgttgatcaacatttttcacacacctttaactcttgaatctattgtgtgtg 17651457  T
Q  265 gaagcaga 272  Q
     |||||||    
T  17651458 aaagcaga 17651465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 41848957 - 41849067
Alignment:
Q  12 ataggacaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatt 104  Q
    |||||||||||||||  ||| |||||||||||||||||||| |||       |||| ||| |||||||||||||||||||||||||||||||| ||||||    
T  41848957 ataggacaccgacaccgctatctatatattaatttatttataaaatatctaaattgagaatcaaaatacatacatatgaatctaacttgagcactttatt 41849056  T
Q  105 tcattgaaaaa 115  Q
    ||||| |||||    
T  41849057 tcattaaaaaa 41849067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 228
Target Start/End: Complemental strand, 44650126 - 44649966
Alignment:
Q  71 tacatacatatgaatctaacttgagcaatttatttcattgaaaaat--ttctatgacaagatacaatagcatttgagctttatttatttatctactatnn 168  Q
    |||||||||| | || ||| |||||||||||||||||||||||||   || ||  ||||||||| |||| |||||| ||||||||||| |||||||||      
T  44650126 tacatacataagcatataaattgagcaatttatttcattgaaaaaaaattataaaacaagataccatagaatttgacctttatttattcatctactatca 44650027  T
Q  169 nnnnntttaaaaatgttgtaatcatctttaatgtctataa-cccttcgttgatcaacattt 228  Q
          |||||||||||||||||| ||||||| ||||||| ||| |  |||||||||||||    
T  44650026 aaaaagttaaaaatgttgtaatcaactttaatttctataagcccctaattgatcaacattt 44649966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 270
Target Start/End: Complemental strand, 4748224 - 4748037
Alignment:
Q  85 tctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatg 183  Q
    ||||||||||||||||||||||||| |||||| |||||  ||||| ||| |||| |||||| ||||||||||| |||| ||||         ||||||||    
T  4748224 tctaacttgagcaatttatttcattggaaaaagttctaaaacaagttacgatagtatttgacctttatttattcatcttctattgaacaaactaaaaatg 4748125  T
Q  184 ttgtaatcatctttaatg--tctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagca 270  Q
     |||||||| ||||||||  |||||||||| ||  ||||||||||||| || | |  | |||||| || |||||| |||||||||||||    
T  4748124 ctgtaatcaactttaatgtctctataacccctcagtgatcaacatttcaca-acacatgtaactcttggatctacggtgtgtggaagca 4748037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 9929631 - 9929731
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||||||||| |||   |||||| ||||||||||||||||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| ||||||||    
T  9929631 aaaatacatatataaacatctaatttgagcaatttatttcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctacta 9929730  T
Q  166 t 166  Q
    |    
T  9929731 t 9929731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 18724775 - 18724691
Alignment:
Q  189 atcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagag 273  Q
    |||| |||| ||||||||||  | |||||||||| ||||||||||| ||||||||||| |||||||||| |||| ||||| ||||    
T  18724775 atcaactttgatgtctataattcctcgttgatcagcatttctcacacatctttaactcttgaatctactatgtgcggaagtagag 18724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 26576061 - 26576161
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||||||||| |||   |||||||||||||||||||| ||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| ||||||||    
T  26576061 aaaatacatatataaacatctaacttgagcaatttatgtcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctacta 26576160  T
Q  166 t 166  Q
    |    
T  26576161 t 26576161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 32200985 - 32200885
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||||||||| |||   |||||||||||||||||||| ||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| ||||||||    
T  32200985 aaaatacatatataaacatctaacttgagcaatttatgtcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctacta 32200886  T
Q  166 t 166  Q
    |    
T  32200885 t 32200885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 13037325 - 13037408
Alignment:
Q  84 atctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactat 166  Q
    |||||||||||||||||||| ||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| |||||||||    
T  13037325 atctaacttgagcaatttatgtcatttgaaaaagttctacaacaagatatcatagtatttgatctttatttattcatctactat 13037408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 18724936 - 18724895
Alignment:
Q  11 cataggacaccgacacaactacctatatattaatttatttat 52  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  18724936 cataggacaccgacaccgctacctatatattaatttatttat 18724895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 34409743 - 34409647
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctac 163  Q
    |||||||||| |||   ||||||||||||||||||| | |||| |||||| |||||  ||||||||  |||| |||||| ||||||||||||||||||    
T  34409743 aaaatacatatataaacatctaacttgagcaatttagt-cattagaaaaagttctacaacaagatattatagtatttgacctttatttatttatctac 34409647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 38783832 - 38783673
Alignment:
Q  14 aggacaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttc 106  Q
    ||||||||||| |  ||| |||||||||||||||||||| |||       |||| ||| ||||||||||||||||  ||||| || | ||||||||||||    
T  38783832 aggacaccgacgctgctatctatatattaatttatttataaaatatctgaattgagaatcaaaatacatacatatacatctatctagggcaatttatttc 38783733  T
Q  107 att-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||  ||||| || ||| ||||||||||| |  ||||||  |||||||||  ||||||||    
T  38783732 attaaaaaaagttttataacaagatacaacaatatttgacatttatttatccatctacta 38783673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 16661351 - 16661291
Alignment:
Q  55 aaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 115  Q
    |||||| ||| || ||||||||||| || |||||||||||||||||||||| ||| |||||    
T  16661351 aaattgagaatcagaatacatacatgtgtatctaacttgagcaatttattttattaaaaaa 16661291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 164
Target Start/End: Original strand, 27004035 - 27004133
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    |||||||||| |||   |||||||||||| |||||||||||||  ||||| ||||   ||||||||  |||| |||||| ||||||||||| |||||||    
T  27004035 aaaatacatatataaacatctaacttgagaaatttatttcattaaaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctact 27004133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 34409633 - 34409577
Alignment:
Q  176 taaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctca 232  Q
    |||||||| | |||||| || ||||||||||||||| |  |||||||||||||||||    
T  34409633 taaaaatgatataatcaactataatgtctataacccctaattgatcaacatttctca 34409577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 50 - 255
Target Start/End: Complemental strand, 18393730 - 18393524
Alignment:
Q  50 tatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctt 148  Q
    |||| |||||| ||| || |||||||||||||| || |||||||| |||||||||| ||| |||||  || ||| |||||||| ||||| |||||| |||    
T  18393730 tatctaaattgagaatcataatacatacatatgcatttaacttgaacaatttattttattaaaaaaagttttataacaagataaaatagtatttgacctt 18393631  T
Q  149 tatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcct 248  Q
    |||||||  |||||||||       |||||||| |||||||||| ||||||||||||||||||||  |||||||||||||||| || ||||||||||| |    
T  18393630 tatttatccatctactatcaaaaaatttaaaaacgttgtaatcaactttaatgtctataacccttgattgatcaacatttctcgcacatctttaactctt 18393531  T
Q  249 gaatcta 255  Q
    |||||||    
T  18393530 gaatcta 18393524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 27401812 - 27401997
Alignment:
Q  56 aattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttattta 154  Q
    ||||| ||| ||||||| |||||| || ||||||||||||||||||||||||||  ||||| || ||| |||||||||||||| |||||  |||||||||    
T  27401812 aattgagaatcaaaatatatacatctgcatctaacttgagcaatttatttcattaaaaaaagttatataacaagatacaatagaatttggcctttattta 27401911  T
Q  155 tttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctt 240  Q
    |  |||||||||          ||||| |||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||||    
T  27401912 tccatctactattgaaagaaaaaaaaacgttgtaatcaactttaatgtctataacccctcgttgatcaacatttttcacacatctt 27401997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 50 - 273
Target Start/End: Original strand, 13097427 - 13097645
Alignment:
Q  50 tatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctt 148  Q
    |||| |||||| ||| ||||||||||||||||| ||||||||  |||||||||||||||| |||||  ||| || |||| ||   || | ||||     |    
T  13097427 tatctaaattgagaatcaaaatacatacatatgcatctaactcaagcaatttatttcattaaaaaaagttccataacaatatttgatcg-attt-----t 13097520  T
Q  149 tatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcct 248  Q
    |||||||| |||||||||       || ||||||||| |||||| |||||||||| ||||||  | |||||||||||||||||||| ||||||||||| |    
T  13097521 tatttattcatctactattgaaaaattaaaaaatgttttaatcaactttaatgtccataacctcttgttgatcaacatttctcacacatctttaactctt 13097620  T
Q  249 gaatctactgtgtgtggaagcagag 273  Q
    |||||||||||||||||||||||||    
T  13097621 gaatctactgtgtgtggaagcagag 13097645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 270
Target Start/End: Complemental strand, 2889884 - 2889699
Alignment:
Q  79 tatgaatctaacttgagcaatttatttcattgaaaaatt-tctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnnttta 177  Q
    |||| |||| ||||||||||||||||||||| |||||   ||||| |||||||||||||| |||||  ||||||||||  |||||||||       ||||    
T  2889884 tatgtatcttacttgagcaatttatttcattaaaaaaaggtctataacaagatacaatagtatttggcctttatttatccatctactatcgaaaaattta 2889785  T
Q  178 aaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagca 270  Q
    |||| |||||| ||| |||       |||| ||||||||||||||||||||  | ||  |||||||||| ||||| |||| ||||||||||||    
T  2889784 aaaacgttgtattcaactt-------tatagcccttcgttgatcaacattttccgcacgtctttaactcttgaatatactatgtgtggaagca 2889699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 267
Target Start/End: Original strand, 1226083 - 1226258
Alignment:
Q  94 agcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatca 192  Q
    ||||||||||||||||||||||  || ||  ||||||||| | || |||||| ||||||||||| |||||||||       |||||||||||||||||||    
T  1226083 agcaatttatttcattgaaaaaagttataaaacaagataccagagtatttgatctttatttattcatctactatcaaaaa-tttaaaaatgttgtaatca 1226181  T
Q  193 tctttaatgtctataaccct-tcgttgatcaacatttctc-acatatctttaactcctgaatctactgtgtgtggaa 267  Q
     ||||||| ||||||| ||| |  ||||| |||||||||| ||| || |||||||| || ||||||  |||||||||    
T  1226182 actttaatttctataaacctctaattgattaacatttctcaacacatatttaactcttgtatctacgatgtgtggaa 1226258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 270
Target Start/End: Complemental strand, 2875532 - 2875344
Alignment:
Q  76 acatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnnt 174  Q
    ||||||| ||||||||||||||||||| ||||||  |||||  | ||| |||||||||||||| |||||  ||||||||||  |||||||||       |    
T  2875532 acatatgtatctaacttgagcaatttagttcattaaaaaaaggtttataacaagatacaatagtatttggcctttatttatccatctactattgaaaaat 2875433  T
Q  175 ttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagca 270  Q
    ||||| | |||||||||| |||       |||| ||||||||||||||||||||  | ||  |||| ||||| ||||| |||| ||||||||||||    
T  2875432 ttaaacacgttgtaatcaactt-------tatagcccttcgttgatcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagca 2875344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 270
Target Start/End: Original strand, 3159842 - 3160028
Alignment:
Q  78 atatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnnttt 176  Q
    ||||| ||||||||||||||||||||||||||  |||||  ||||| ||||| |||||||| |||||  ||||||||||  ||||| |||       |||    
T  3159842 atatgtatctaacttgagcaatttatttcattaaaaaaaggtctataacaagttacaatagtatttggcctttatttatccatctaatatcgaaaaattt 3159941  T
Q  177 aaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagca 270  Q
    ||| | |||||||||| |||       |||| ||||||||||||||||||||  | ||  |||||||||| ||||| |||| |||||| |||||    
T  3159942 aaacacgttgtaatcaactt-------tatagcccttcgttgatcaacattttccgcacgtctttaactcttgaatatactatgtgtgtaagca 3160028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 28867225 - 28867336
Alignment:
Q  11 cataggacaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttat 103  Q
    |||| |||||| |||| |||| |||||||||||||||||||| |||       |||| ||| ||||||||||| ||||| ||||||||| || |||||||    
T  28867225 cataagacaccaacactactatctatatattaatttatttataaaacatttaaattgagaatcaaaatacatatatatgcatctaacttaagtaatttat 28867324  T
Q  104 ttcattgaaaaa 115  Q
    |||||| |||||    
T  28867325 ttcattaaaaaa 28867336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 3145256 - 3145339
Alignment:
Q  84 atctaacttgagcaatttatttcattgaaaaatt-tctatgacaagatacaatagcatttgagctttatttatttatctactat 166  Q
    |||| ||||||||||||||||||||| |||||   ||||| |||||||||||||| |||||  ||||||||||  |||||||||    
T  3145256 atcttacttgagcaatttatttcattaaaaaaaggtctataacaagatacaatagtatttggcctttatttatccatctactat 3145339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 2796200 - 2796294
Alignment:
Q  76 acatatgaatctaacttgagcaatttatttcatt----gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactat 166  Q
    ||||||| ||||||||||||||||||||||||||     |||||  ||||| ||||| |||||||| |||||  ||||||||||  |||||||||    
T  2796200 acatatgcatctaacttgagcaatttatttcattaaaaaaaaaaggtctataacaagttacaatagtatttggcctttatttatccatctactat 2796294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 28869800 - 28869899
Alignment:
Q  23 acacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 115  Q
    |||| |||| |||||||||||||||||||| |||       |||| ||| ||||||||||||||||| ||||||||| |  ||||||||||||| |||||    
T  28869800 acactactatctatatattaatttatttataaaatatttaaattgagaatcaaaatacatacatatgcatctaacttaaataatttatttcattaaaaaa 28869899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 15850619 - 15850518
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||| ||| | |||||| |||||||| |||||||||| |||||| || ||  ||||||||  | || ||||||  |||||||||| |||||||    
T  15850619 caaaatacatatataagtatctaatttgagcaaattatttcattagaaaaagttataaaacaagatatcacagtatttgacatttatttattcatctact 15850520  T
Q  165 at 166  Q
    ||    
T  15850519 at 15850518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 28421061 - 28421141
Alignment:
Q  87 taacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactat 166  Q
    ||||||||||||||||| ||||| |||||| || ||  ||||||||  |||  |||||| ||||||||||| |||||||||    
T  28421061 taacttgagcaatttatgtcattagaaaaagttttacaacaagatatcatatgatttgacctttatttattcatctactat 28421141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 50 - 273
Target Start/End: Original strand, 209174 - 209396
Alignment:
Q  50 tatcaaaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctt 148  Q
    |||| |||||| ||| ||||||||||||||||| ||||||||  |||||||||||||||| |||||  |||||| |||| |||||| |  |||||  |||    
T  209174 tatctaaattgagaatcaaaatacatacatatgcatctaact--agcaatttatttcattaaaaaaagttctataacaaaatacaacaatatttggcctt 209271  T
Q  149 tatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcct 248  Q
    |||||||  |||||| ||       |||||||| |||||||| | |||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |    
T  209272 tatttatccatctacaatcgaaaaatttaaaaacgttgtaataaactttaatgtcgataacccctcgttgatcaacatttctcacaaatctttaactctt 209371  T
Q  249 gaatctactgtgtgtggaagcagag 273  Q
    ||||||||  |||||| ||||||||    
T  209372 gaatctaccatgtgtgaaagcagag 209396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 557 - 294
Alignment:
Q  15 ggacaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttca 107  Q
    ||||||||||||  ||| |||||||||||||||||||| |||       |||  ||| ||||||||||| ||||| ||||||||||||||| ||||||||    
T  557 ggacaccgacaccgctatctatatattaatttatttataaaagatcttaattaagaatcaaaatacata-atatgcatctaacttgagcaaattatttca 459  T
Q  108 ttgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctat 206  Q
    || |||||  |||||| |||||||||||||| |||||| ||||||||||  |||| ||||       || ||| | |||| ||||| |||| ||||| ||    
T  458 ttaaaaaaaattctataacaagatacaatagtatttgacctttatttatccatctgctatcgaaaa-ttgaaatacgttggaatcaactttgatgtccat 360  T
Q  207 aacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcaga 272  Q
    ||||| | |||||||||||||||||||| ||||||||| | |||||||||||||||| ||||||||    
T  359 aacccattgttgatcaacatttctcacacatctttaacccttgaatctactgtgtgtagaagcaga 294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 246
Target Start/End: Complemental strand, 33235014 - 33234836
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    ||||||||||||||  | |||||||||||||||||||||||||| ||||| || ||| |||||||||||||| |||||| | ||||||||  ||||||||    
T  33235014 caaaatacatacat--gcatctaacttgagcaatttatttcattaaaaaagttttataacaagatacaatagtatttga-ccttatttatccatctacta 33234918  T
Q  166 tnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatc--aacatttctcacatatctttaactc 246  Q
    |       ||| ||||||||||||||| |||||||||||||||||| |  ||||||  ||||||||||||  |||||||||||    
T  33234917 t-cgaaaatttcaaaatgttgtaatcaactttaatgtctataaccccttcttgatcaaaacatttctcacgcatctttaactc 33234836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 2602031 - 2602289
Alignment:
Q  15 ggacaccgacacaactacctatatattaatttatttatcaaa-------attgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttca 107  Q
    ||||||||||||  |||||||||||||||||||||||| |||       |||  ||| ||||||||| ||||||| ||||||||| ||||  ||| ||||    
T  2602031 ggacaccgacacctctacctatatattaatttatttataaaagatctaaattaagaatcaaaatacaaacatatgcatctaactt-agcagattacttca 2602129  T
Q  108 tt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatgttgtaatcatctttaatgtctat 206  Q
    || ||||||  | ||| |||||||||||||| ||||   ||||||||||  || ||||||       ||||||  ||||||||||| ||||||||| |||    
T  2602130 ttagaaaaaggtatataacaagatacaatagtatttaccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttat 2602229  T
Q  207 aacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaag 268  Q
    || || | |||||||||||||||||||| |  |||||||| |||||||  ||||||||||||    
T  2602230 aaaccctagttgatcaacatttctcacaga--tttaactcttgaatctgttgtgtgtggaag 2602289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 17261714 - 17261801
Alignment:
Q  186 gtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagag 273  Q
    ||||||| |||||||||  ||||||| || ||||||||||||||||||| ||||||||||| | |||||| |||||||||||||||||    
T  17261714 gtaatcaactttaatgtacataacccctcattgatcaacatttctcacacatctttaactcttaaatctaatgtgtgtggaagcagag 17261801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 12843903 - 12844069
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||||||||| |||   |||||||||||||||| ||||||||| ||| || |||||  | ||||||  |||| |||||| ||||||||||| ||||||||    
T  12843903 aaaatacatatataaacatctaacttgagcaatatatttcattagaacaagttctacaataagatatcatagtatttgacctttatttattcatctacta 12844002  T
Q  166 tnnnnnnntttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctca 232  Q
    |         |||||||| | |||||| || |||||| |||||||| |  |||||||||||||||||    
T  12844003 tcaaaaaagctaaaaatgatataatcaactataatgtgtataacccctaattgatcaacatttctca 12844069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 57106 - 57162
Alignment:
Q  176 taaaaatgttgtaatcatctttaatgtctataaccct-tcgttgatcaacatttctc 231  Q
    |||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||    
T  57106 taaaaatgttataatcaactttaatgtctataaccctctagttgatcaacatttctc 57162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 34708928 - 34709028
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||||||||| |||   |||||||||||| ||||||||||||| |||||| ||||   ||||||||  |||| |||||| ||||||||||| ||||||||    
T  34708928 aaaatacatatataaacatctaacttgagaaatttatttcattagaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctacta 34709027  T
Q  166 t 166  Q
    |    
T  34709028 t 34709028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 6821025 - 6821073
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaa 114  Q
    ||||||| ||||||||| ||||| |||||||||||||||||||| ||||    
T  6821025 caaaatatatacatatgcatctatcttgagcaatttatttcattaaaaa 6821073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 19294385 - 19294482
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||||||||| |||   ||||||||| |||||||||||||||| |||||| |||    ||||||||  |||| |||||| ||||||||||| ||||||||    
T  19294385 aaaatacatatataaacatctaacttaagcaatttatttcattagaaaaagttc---aacaagatatcatagtatttgacctttatttattcatctacta 19294481  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 17540017 - 17540117
Alignment:
Q  67 aaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctacta 165  Q
    |||||||||| |||   |||||||||| |||||||||  |||| |||||| ||||   | ||||||  |||| |||||| ||||||||||||||||||||    
T  17540017 aaaatacatatataaacatctaacttgggcaatttatgacattagaaaaagttctgcaataagatatcatagtatttgacctttatttatttatctacta 17540116  T
Q  166 t 166  Q
    |    
T  17540117 t 17540117  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 273
Target Start/End: Complemental strand, 42718643 - 42718554
Alignment:
Q  183 gttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacatatctttaactcctgaatctactgtgtgtggaagcagag 273  Q
    |||| ||||| ||||||||| ||||| || |||||| |||||||||||||||  | |||||||| | |||||| |||||||||||||||||    
T  42718643 gttggaatcaactttaatgtttataatccctcgttgttcaacatttctcacacgt-tttaactcttaaatctattgtgtgtggaagcagag 42718554  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 21409023 - 21408922
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||| | ||| |||||||| |||||||| |||||||||| |||||| |||||  | ||||||   ||| |||||| ||||||||||| |||||||    
T  21409023 caaaatacaaatataagaatctaatttgagcaagttatttcattagaaaaaattctaaaataagatatcgtagtatttgacctttatttattcatctact 21408924  T
Q  165 at 166  Q
    ||    
T  21408923 at 21408922  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 166
Target Start/End: Original strand, 11410682 - 11410783
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    |||||||||||  || | ||||||||||||||| |||||||||| |||||| |||||  | ||||||   ||| |||| | ||||||||||| |||||||    
T  11410682 caaaatacatatttaagcatctaacttgagcaagttatttcattagaaaaagttctaaaagaagatatcgtagtatttaacctttatttattcatctact 11410781  T
Q  165 at 166  Q
    ||    
T  11410782 at 11410783  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 32676797 - 32676657
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctact 164  Q
    ||||||||||||||| | |||||| ||||||||||||||||||| |||||| || ||  ||||||||  |||  |||||| | ||||||||| |||||||    
T  32676797 caaaatacatacataagcatctaa-ttgagcaatttatttcattagaaaaagttataaaacaagatatcatattatttgatc-ttatttattcatctact 32676700  T
Q  165 atnnnnnnntttaaaaatgttgtaatcatctttaatgtctata 207  Q
    ||        ||||||||||| |||||| ||||||||||||||    
T  32676699 atcaaaaaagttaaaaatgttataatcaactttaatgtctata 32676657  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 38989395 - 38989252
Alignment:
Q  84 atctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaat 182  Q
    |||||||||||||||||||| ||||| |||||| |||||  ||||||||  |||| ||||||  |||||||||| |||||||||       |||||||||    
T  38989395 atctaacttgagcaatttatgtcattagaaaaagttctacaacaagatatcatagtatttgacttttatttattcatctactatcaaaagatttaaaaat 38989296  T
Q  183 gttgtaatcatctttaatgtctataacccttcgttgatcaacattt 228  Q
    | | ||||||    ||||||||||||||| |  |||||||||||||    
T  38989295 gatataatca--aataatgtctataacccctaattgatcaacattt 38989252  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 4112005 - 4112065
Alignment:
Q  55 aaattgtgaagcaaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 115  Q
    |||||| ||| ||||||||||||||||| |||||||  |||| |||||||||||| |||||    
T  4112005 aaattgagaatcaaaatacatacatatgcatctaaccggagccatttatttcattaaaaaa 4112065  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 40837805 - 40837871
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagata 131  Q
    ||||||||||| ||| | ||||||||||||||| |||||||||| |||||| |||||  ||||||||    
T  40837805 caaaatacatatataagcatctaacttgagcaaattatttcattagaaaaagttctaaaacaagata 40837871  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 41815836 - 41815796
Alignment:
Q  12 ataggacaccgacacaactacctatatattaatttatttat 52  Q
    |||||||||||||||  |||| |||||||||||||||||||    
T  41815836 ataggacaccgacaccgctacatatatattaatttatttat 41815796  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 232
Target Start/End: Original strand, 2641136 - 2641307
Alignment:
Q  66 caaaatacataca---tatgaatctaacttgagcaatttatttcattgaaaaat-ttctatgacaagatacaatagcatttgagctttatttatttatct 161  Q
    |||||||||||||   || |||| ||| |||||||| ||||||||||||||||  |||||  |||| |||| || | |||||| ||||||||||||||||    
T  2641136 caaaatacatacacaataagaatttaatttgagcaacttatttcattgaaaaaagttctaaaacaaaatactatggtatttgacctttatttatttatct 2641235  T
Q  162 actatnnnnnnntttaaaaatgttgtaatcatctttaatgtctataac-ccttcgttgatcaacatttctca 232  Q
    |||||        | |||||  ||||||||| ||||||| |||||||| || |  |||||||||||||||||    
T  2641236 actataaaaaaagtcaaaaacattgtaatcaactttaatttctataactccatgattgatcaacatttctca 2641307  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 54305676 - 54305752
Alignment:
Q  87 taacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatcta 162  Q
    ||||||||||||||||||| ||| |||||| ||||| |||||||||  |||| |||||| ||||||||||| |||||    
T  54305676 taacttgagcaatttatttaattagaaaaagttctacgacaagatatcatagtatttgacctttatttattcatcta 54305752  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 32593730 - 32593835
Alignment:
Q  11 cataggacaccgacacaactacctatatattaatttatttatcaa-------aattgtgaagcaaaatacatacatatgaatctaacttgagcaatttat 103  Q
    |||||||||| |||||  |||||| |||| |||||||||||| ||       |||| |||| ||||||||| ||||||| ||||||||| ||||||||||    
T  32593730 cataggacactgacaccgctacctgtatactaatttatttataaatgatctaaattatgaatcaaaatacacacatatgcatctaacttaagcaatttat 32593829  T
Q  104 ttcatt 109  Q
    ||||||    
T  32593830 ttcatt 32593835  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 270
Target Start/End: Original strand, 44507705 - 44507893
Alignment:
Q  84 atctaacttgagcaatttatttcattgaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactatnnnnnnntttaaaaatg 183  Q
    |||||| ||||| ||||||||||||| ||||| |||||  |||| |||  ||  ||||||| ||||||||||  |||| ||||         ||||||||    
T  44507705 atctaatttgagaaatttatttcattaaaaaaattctaaaacaaaatatgatgacatttgacctttatttatccatcttctataaaaaaagataaaaatg 44507804  T
Q  184 ttgtaatcatctttaatgtctataacccttcgttgatc-aacatttctc-acatatctttaactcctgaatctactgtgtgtggaagca 270  Q
    |||||||   ||||||||||||||| || || |||||| |||||||||| |||||| |||||||| ||  ||||  |||||||||||||    
T  44507805 ttgtaattgactttaatgtctataatccctcattgatctaacatttctcaacatatatttaactcatgtgtctatggtgtgtggaagca 44507893  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 32593973 - 32594018
Alignment:
Q  216 ttgatcaacatttctcacatatctttaactcctgaatctactgtgtgt 263  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||    
T  32593973 ttgatcaacatttctcacat--ctttaactcttgaatctactgtgtgt 32594018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 40289294 - 40289214
Alignment:
Q  87 taacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagctttatttatttatctactat 166  Q
    |||||||  |||||||||||||| |||||| |||||  ||||||||  |||| |||||| ||||||||||| |||||||||    
T  40289294 taacttggacaatttatttcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactat 40289214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 166
Target Start/End: Original strand, 17732772 - 17732874
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcatt-gaaaaatttctatgacaagatacaatagcatttgagc-tttatttatttatctac 163  Q
    ||||||||||| ||| | ||||||||||||||| |||||||||| |||||| |||||   |||||||   ||| |||||| | |||||||||| ||||||    
T  17732772 caaaatacatatataagcatctaacttgagcaagttatttcattagaaaaagttctaaagcaagatatcgtagtatttgaccttttatttattcatctac 17732871  T
Q  164 tat 166  Q
    |||    
T  17732872 tat 17732874  T

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Target: scaffold0325 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 12877 - 12926
Alignment:
Q  66 caaaatacatacatatgaatctaacttgagcaatttatttcattgaaaaa 115  Q
    ||||||||| ||||| |||| |||||||||||||||||||||| ||||||    
T  12877 caaaatacaaacataagaatttaacttgagcaatttatttcatcgaaaaa 12926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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