View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12930_low_18 (Length: 331)
Name: NF12930_low_18
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 26991729 - 26991412
Alignment:
| Q |
1 |
atcgccacttacatcttcatctcctcccaccttcccttctaaggaagaacactactatccatccaacaagccagtgcattattacatcctcgagccagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991729 |
atcgccacttacatcttcatctcctcccaccttcccttctaaggaagaacactactatccatccaacaagccagtgcattattacatcctcgagccagaa |
26991630 |
T |
|
| Q |
101 |
ccgtcgcttcgagtttctaacagcttgctcagttcaaaattatgatgtcgcagatgagtctgaagaaaaagatcaaatcagcgaggtttcttctaaggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991629 |
ccgtcgcttcgagtttctaacagcttgctcagttcaaaattatgatgtcgcagatgagtctgaagaaaaagatcaaatcagcgaggtttcttctaaggaa |
26991530 |
T |
|
| Q |
201 |
caagcacaagaagaagaagtgaaggaactggttgagcagagtatatggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991529 |
caagcacaagaagaagaagtgaaggaactggttgagcagagtatatggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggt |
26991430 |
T |
|
| Q |
301 |
tatgcggaccgttgatga |
318 |
Q |
| |
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|||||||||||||||||| |
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| T |
26991429 |
tatgcggaccgttgatga |
26991412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 27006160 - 27005858
Alignment:
| Q |
1 |
atcgccacttacatcttcatctcctcccaccttcccttctaaggaagaacactactatccatccaacaagccagtgcattattacatcctcgagccagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |
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| T |
27006160 |
atcgccacttacatcttcatctcctcccaccttcccttctaaggaagaacactactatccatttaacaaaccaatgcattattacatcctcgagccagaa |
27006061 |
T |
|
| Q |
101 |
ccgtcgcttcgagtttctaacagcttgctcagttcaaaattatgatgtcgcagatgagtctgaagaaaaagatcaaatcagcgaggtttcttctaaggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
27006060 |
ccgtcgcttcgagtttctaacagcttgctcagttcaaaattacgatgctatagatgaatctgaagaaaaagttcaaatcagcgaggtttcttcta----- |
27005966 |
T |
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| Q |
201 |
caagcacaagaagaagaagtgaaggaactggttgagcagagtatatggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
27005965 |
----------aagaagaagtgaaggaactggttgagcagagtatatggattcagatgaaggaaattgtattgtttactggacctgctattggtctttggt |
27005876 |
T |
|
| Q |
301 |
tatgcggaccgttgatga |
318 |
Q |
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|||| ||||||||||||| |
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| T |
27005875 |
tatgtggaccgttgatga |
27005858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 50 - 318
Target Start/End: Original strand, 26975786 - 26976048
Alignment:
| Q |
50 |
cactactatccatccaacaagccagtgcattattacatcctcgagccagaaccgtcgcttcgagtttctaacagcttgctcagttcaaaattatgatgtc |
149 |
Q |
| |
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|||| |||||||| | |||| ||| |||||||| |||||||||||| |||||||||||||| ||| |||||| || || | |||||||| | || ||| |
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| T |
26975786 |
cactgctatccattccacaaaccaacgcattatttcatcctcgagccggaaccgtcgcttcgggttcctaacacctcgcgtacttcaaaatcaagaagtc |
26975885 |
T |
|
| Q |
150 |
gcagatgagtctgaagaaaaagatcaaatcagcgaggtttcttctaaggaacaagcacaagaagaagaagtgaaggaact---ggttgagcagagtatat |
246 |
Q |
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||| | || || ||| | |||| ||||||||| ||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||| |
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| T |
26975886 |
gcaaacgaatccgaacaccaagaacaaatcagccaggtttcttctaaagaa---------gaagaagaagtgaaggaactactggttgagcaaagtatat |
26975976 |
T |
|
| Q |
247 |
ggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggttatgcggaccgttgatga |
318 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
26975977 |
ggattcagatgaaggaaattgtattgtttactggacctgctattggtctttggttatgtggaccgttgatga |
26976048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 26946612 - 26946535
Alignment:
| Q |
241 |
gtatatggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggttatgcggaccgttgatga |
318 |
Q |
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||||||||||||| |||||||||||||| |||||| | |||||||| ||| |||||| |||| ||||||||||||| |
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| T |
26946612 |
gtatatggattcaattgaaggaaattgttaaatttacagcacctgcaactggactttggatatgtggaccgttgatga |
26946535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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