View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12930_low_23 (Length: 253)
Name: NF12930_low_23
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 10490468 - 10490254
Alignment:
| Q |
1 |
cctgaaaacaaatcataaattataagatacacacattgacaatacacaagcagttttggttgttaagaatctatgacagtctttccgattctgtcattat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10490468 |
cctgaaaacaaatcataaattataagatacacacattaacaatacacaagcagttttggttgttaataatctatgacagtctttccgattctgtcattat |
10490369 |
T |
|
| Q |
101 |
ttcaaaacataaagaatgacagaatcttgtggcatcctacaaacagtgtgtggcaatgtctgaacactggaattgtaaagtactgatataaattcaatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10490368 |
ttcaaaacataaagaatgacagaatcttgtgggatcctacaaacagtgtgtggcaatgtatgaacactggaattgtaaagtactgatatgaattcaatag |
10490269 |
T |
|
| Q |
201 |
cagttaaaaaccaaa |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10490268 |
cagttaaaaaccaaa |
10490254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 10464987 - 10464794
Alignment:
| Q |
21 |
tataagatacacacattgacaatacacaagcagttttggttgttaagaatctatgacagtctttccgatt----------------ctgtcattatttca |
104 |
Q |
| |
|
||||||| ||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||| |||| |||| ||||||||| |
|
|
| T |
10464987 |
tataagaaacacaaattaacaatacacaaacagttttggttgttaagaatctatgtcagtctttctgattactacaattgatcaacctgttattatttca |
10464888 |
T |
|
| Q |
105 |
aaacataaagaatgacagaatcttgtggcatcctacaaacagtgtgtggcaatgtctgaacactggaattgtaaagtactgatataaattcaat |
198 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||| ||||||||||| |
|
|
| T |
10464887 |
aaacataagtaatgacagaatcttgtggcatcctacaaacagtgtgtggcaatgtatgaacattggaattgtaaagtattgaaataaattcaat |
10464794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 10476244 - 10476159
Alignment:
| Q |
1 |
cctgaaaacaaatcataaattataagatacacacattgacaatacacaagcagttttggttgttaagaatctatgacagtctttcc |
86 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| | | ||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
10476244 |
cctgaaaactaatcataaattataagaaacacaaactaacaatacacaagcagttttggttgttatgaatctatgagagtctttcc |
10476159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 10490233 - 10490200
Alignment:
| Q |
207 |
aaaaccaaatgcagcaacatcaatacttgtgttc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10490233 |
aaaaccaaatgcagcaacatcaatacttgtgttc |
10490200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University