View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12930_low_24 (Length: 250)
Name: NF12930_low_24
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_low_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 46 - 250
Target Start/End: Complemental strand, 26809557 - 26809349
Alignment:
| Q |
46 |
aatgtgagtatgagagagaaagatatctaa-----tacaaaatgatcgtacaaatatcatttttcaaaataattacttgttcctgcatcaacgaaagtaa |
140 |
Q |
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| T |
26809557 |
aatgtgagtatgagagagaaagatgtctaaattattacaaaatgatcgtacaaatatcatttctcaaaagaattacttgttcctacatcaaagaaagtaa |
26809458 |
T |
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| Q |
141 |
tatagaacaaatcactcgcaaagatcatgtaattgatgaaattaaaagac-ttccgatcacatcacacctccatgcaatgacaccaattctaaaataaaa |
239 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26809457 |
tatagaacaaatcactcgcaaaga--atgttgttgatgaaattaaaagactttcctatcacatcacacctccatgcaatgacaccaattctaaaataaaa |
26809360 |
T |
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| Q |
240 |
tttaattttga |
250 |
Q |
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||||||||||| |
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| T |
26809359 |
tttaattttga |
26809349 |
T |
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