View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12930_low_25 (Length: 249)
Name: NF12930_low_25
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_low_25 |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: scaffold0069 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 686 - 921
Alignment:
| Q |
1 |
tttggttgccgttgtttcgaattttttcaagtgaaataaatagnnnnnnnn---aagggaagtgaaataaatagttaggcatgtaatccatggagttatt |
97 |
Q |
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| T |
686 |
tttggttgccgttgtttcgaattttttcaagtgaaataaatagtttttttttttaagggaagtgaaataaatagttaggcatgtaatccatggagttatt |
785 |
T |
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| Q |
98 |
ttgcnnnnnnn-atgtttctttattgatggtaaaagaaagtattcctgaattctatttgagacatctgatctaagtgttgataaaattagcttgaattct |
196 |
Q |
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| T |
786 |
ttgttttttgttatgtttctttattgatggtaaaataaagtattcctgaattctatttgagacatctaatctaagtgttgataaaattagcttgaattct |
885 |
T |
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| Q |
197 |
taagctttgcacgactaaatttattcctactgtttt |
232 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
886 |
taagctttgcacgactaaatttattcctactgtttt |
921 |
T |
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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 42574840 - 42574769
Alignment:
| Q |
1 |
tttggttgccgttgtttcgaattttttcaagtgaaataaatagnnnnnnnnaagggaagtgaaataaatagt |
72 |
Q |
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| T |
42574840 |
tttggttgctgttgtttcgaattttttcaagtgaaataaatagttttttttaagggaagtgaaataaatagt |
42574769 |
T |
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