View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12930_low_28 (Length: 242)
Name: NF12930_low_28
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21482088 - 21482308
Alignment:
| Q |
1 |
ataagaagaataactcaccggtgttctctagcaaatacatcctgcttttgttgttaggccaatatctgatgctccaagaagaaataatcaaaagataaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21482088 |
ataagaagaataactcaccggtgttctccagcaaatacatcctgcttttgttgttaggccaatatctgatgctccaagaagaaataatcaaaagataaaa |
21482187 |
T |
|
| Q |
101 |
ttttagtcgcaatgtatcatcatcataatttatgaacataaaaaacaaaatgatgaagttaaatttgtccatgaaaatttgcttacctataacgcatatt |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21482188 |
ttttagtcccaatgtatcatcatcataatttataaacataaaaaacaaaatgatgaagttaaatttgtccatgaaaatttgcttacctataacgcatatt |
21482287 |
T |
|
| Q |
201 |
ccaaactcgagaagttccaat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21482288 |
ccaaactcgagaagttccaat |
21482308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University