View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12930_low_29 (Length: 241)
Name: NF12930_low_29
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10490457 - 10490680
Alignment:
| Q |
1 |
tttgttttcaggtggaagacaagaatacctgatcggggtccaacgttcttcaaagtcttactcattttcgtggaattgatgaagaaatagttgaaccgtc |
100 |
Q |
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| T |
10490457 |
tttgttttcaggtggaagacaagaatacctgatcggggtccaacgttcttcaaagtcttgctcattttcgtggaattgatgaagaaatagttgaaccgtc |
10490556 |
T |
|
| Q |
101 |
tgcatagttaattccaatttcatgttaagaacccgagaaacttttannnnnnncatctgtttatgtttatattttactgaatcacttcatgtggaattct |
200 |
Q |
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| T |
10490557 |
tgcatagttaattccaatttcatgttaagaacccgagaaacttttatttttttcatctgtttatgtttatattttactgaatcacttcatgtggaattct |
10490656 |
T |
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| Q |
201 |
tcttatattagtttatgcaataat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
10490657 |
tcttatattagtttatgcaataat |
10490680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 10476236 - 10476453
Alignment:
| Q |
4 |
gttttcaggtggaagaca-agaatacctgatcggggtccaacgttcttcaaagtcttactcattttcgtggaattgatgaagaaatagttgaaccgtctg |
102 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||| ||||| ||| ||||| |
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| T |
10476236 |
gttttcaggtggaagacttagaatacctgatcggggtccaacattcttcaaagtcttgctcatttttgtggaattgatcaagcaatagccgaagtgtctg |
10476335 |
T |
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| Q |
103 |
catagttaattccaatttcatgttaagaacccgagaaacttttannnnnnncatctgtttatgtttatattttactgaatcacttcatgtggaattcttc |
202 |
Q |
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| T |
10476336 |
gatggttaatttcattttcatgttatgaaccggagaaactttta-tttttacatctgtttatgtttatattttactgaatcacttcatgtcgaa---ttc |
10476431 |
T |
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| Q |
203 |
ttatattagtttatgcaataat |
224 |
Q |
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|||||||||||||| ||||||| |
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| T |
10476432 |
ttatattagtttatacaataat |
10476453 |
T |
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