View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12930_low_5 (Length: 643)

Name: NF12930_low_5
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12930_low_5
NF12930_low_5
[»] chr2 (1 HSPs)
chr2 (1-635)||(2535860-2536494)


Alignment Details
Target: chr2 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 1 - 635
Target Start/End: Complemental strand, 2536494 - 2535860
Alignment:
Q  1 ataccattacaatcatcaagacaacacaatttgtatataagtatgttcagcaaaagaatatacacaatatttctaaaccatgataatttcatatagtcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2536494 ataccattacaatcatcaagacaacacaatttgtatataagtatgttcagcaaaagaatatacacaatatttctaaaccatgataatttcatatagtcat 2536395  T
Q  101 caatcgaatggcacaactgttaatcaaatgaccataacacagcctcaaaaatactacaaatataaacagagaacaaatccaaaacatgtaccaaactaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2536394 caatcgaatggcacaactgttaatcaaatgaccataacacagcctcaaaattactacaaatataaacagagaacaaatccaaaacatgtaccaaactaac 2536295  T
Q  201 cacaaaactttacctcagagaatactgatgacttgatttctctgagacatctttttggagtcttcactcttcaccggtcagtttcgcatcttcctctgcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  2536294 cacaaaactttacctcagagaatactgatgacttgatttctctgagacatctttttgaagtcttcactcttcaccggtcagtttcgcgtcttcctctgcc 2536195  T
Q  301 tggttttcgtcatcagaacccaccaccagcgatggccgtaattctcttcttagcacatttcgagtcagttctgcttgtgttgtattcgatggcacgcttt 400  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2536194 tggttttcgtcatcagaacccaccaccagcaatggccgtaattctcttcttagcacatttcgagtcagttctgcttgtgttgtattcgatggcacgcttt 2536095  T
Q  401 gttccagatctggccggtaccagagtgaactgggcctatggcaggcttccatgggcttaaaagtgaggggtttgactttggcatcataattgaattagtt 500  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2536094 gttccagatctggccggtaccggagtgaactgggcctatggcaggcttccatgggcttaaaagtgaggggtttgactttggcatcataattgaattagtt 2535995  T
Q  501 ttccacttgaagaaatatgtcactcacactcttagtataaatccccctccttacatattccaaaaaaccaaacaaaagctcaatcctcaaccccactgat 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||    
T  2535994 ttccacttgaagaaatatgtcactcacactcttagtataaatccccctccttacatattccaaaaaaccaaacaaaagctcactcctcaatcccactaat 2535895  T
Q  601 taactcctcaactcttcttcagctgtcttcatctc 635  Q
    |||||||||||||||||||||||||||||||||||    
T  2535894 taactcctcaactcttcttcagctgtcttcatctc 2535860  T

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