View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12930_low_7 (Length: 550)
Name: NF12930_low_7
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 6e-97; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 237 - 533
Target Start/End: Complemental strand, 31029832 - 31029536
Alignment:
| Q |
237 |
gtttgattcgttcaattgtcaacattcaagttcaaaccataagaatattacaagtagtcaagctaaacgaatttcaaaaacctgtttttcatgcatggag |
336 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
31029832 |
gtttgattcgttcaattgtcaactttcaagttcaaaccataagaat--tgcaattagtcaagctaaacgaatttcaaaaactcgttcttcatgcatggag |
31029735 |
T |
|
| Q |
337 |
ccacnnnnnnnnnnnnnnnnnnn--gtttgcttgtttcaaaacataccattcacatcttcaaatctcaagcaaagaaacttgttgtaataaggatatcat |
434 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31029734 |
tcactatatatatatccatatatatgtttgcttgttccaaaacataccattcacatcttcaaatctcaagcaaagaaacttgttgtaataaggatatcat |
31029635 |
T |
|
| Q |
435 |
caataaggcacaaaactagaaggaatttatttaattatttcatccaaattacattacattaatactacaaattaaacatatatggctttttcttataat |
533 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31029634 |
caataaggcacaaaactagaaggaatttttttaattatttcatccaaattacattacattaatactacaaattaaacctatatggctttttcttataat |
31029536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 237 - 533
Target Start/End: Complemental strand, 31036802 - 31036506
Alignment:
| Q |
237 |
gtttgattcgttcaattgtcaacattcaagttcaaaccataagaatattacaagtagtcaagctaaacgaatttcaaaaacctgtttttcatgcatggag |
336 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
31036802 |
gtttgattcgttcaattgtcaactttcaagttcaaaccataagaat--tgcaattagtcaagctaaacgaatttcaaaaactcgttcttcatgcatggag |
31036705 |
T |
|
| Q |
337 |
ccacnnnnnnnnnnnnnnnnnnn--gtttgcttgtttcaaaacataccattcacatcttcaaatctcaagcaaagaaacttgttgtaataaggatatcat |
434 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31036704 |
tcactatatatatatccatatatatgtttgcttgttccaaaacataccattcacatcttcaaatctcaagcaaagaaacttgttgtaataaggatatcat |
31036605 |
T |
|
| Q |
435 |
caataaggcacaaaactagaaggaatttatttaattatttcatccaaattacattacattaatactacaaattaaacatatatggctttttcttataat |
533 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31036604 |
caataaggcacaaaactagaaggaatttttttaattatttcatccaaattacattacattaatactacaaattaaacctatatggctttttcttataat |
31036506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 237 - 533
Target Start/End: Complemental strand, 31026979 - 31026701
Alignment:
| Q |
237 |
gtttgattcgttcaattgtcaacattcaagttcaaaccataagaatattacaagtagtcaagctaaacgaatttcaaaaacctgtttttcatgcatggag |
336 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||| |
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| T |
31026979 |
gtttgattcgttcaattgtcaactttcaagttcaaaccataagaatattacagttagtcaaactaaacgaatttcaaaaactcgtacttcatgcatggag |
31026880 |
T |
|
| Q |
337 |
ccacnnnnnnnnnnnnnnnnnnngtttgcttgtttcaaaacataccattcacatcttcaaatctcaagcaaagaaacttgttgtaataaggatatcatca |
436 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31026879 |
tcactatatatatccatatatatgtttgcttgttccaaaacataccattcacatcttcaaatctcaagcaaagaaacttgt------------------a |
31026798 |
T |
|
| Q |
437 |
ataaggcacaaaactagaaggaatttatttaattatttcatccaaattacattacattaatactacaaattaaacatatatggctttttcttataat |
533 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31026797 |
ataaggcacaaaactagaaggaatttttttaattatttcatccaaattacattacattaatactacaaattaaacctatatggctttttcttataat |
31026701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 31037015 - 31036889
Alignment:
| Q |
7 |
tagataatactccggtaaatagaatgggtctccatttagccgattttgagacacaggactaaatgaatgcaaaataaataaattgtcaccgtgcctgttt |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31037015 |
tagaaaatactccggtaaatagaatgggtctccatttagccgattttgagacacaggactaaatgaatgcaaaataaataaattgtcaccgtgcctgttt |
31036916 |
T |
|
| Q |
107 |
ggagtattaaaatggataatcaacggt |
133 |
Q |
| |
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||||||||||||||||||||| ||||| |
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| T |
31036915 |
ggagtattaaaatggataatccacggt |
31036889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 427 - 533
Target Start/End: Complemental strand, 31041809 - 31041703
Alignment:
| Q |
427 |
gatatcatcaataaggcacaaaactagaaggaatttatttaattatttcatccaaattacattacattaatactacaaattaaacatatatggctttttc |
526 |
Q |
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||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31041809 |
gatattatcaataaggcacaaaactagaaggaaattttttaattatttcatccaaattacattacattaatactacaaattaaacctatatggctttttc |
31041710 |
T |
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| Q |
527 |
ttataat |
533 |
Q |
| |
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||||||| |
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| T |
31041709 |
ttataat |
31041703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 31041987 - 31041908
Alignment:
| Q |
237 |
gtttgattcgttcaattgtcaacatt--caagttcaaaccataagaatattacaagtagtcaagctaaacgaatttcaaaa |
315 |
Q |
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|||||||||||||||| |||||| || ||||||||||||||||||| ||||||| |||||||||| |||||||||||||| |
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| T |
31041987 |
gtttgattcgttcaatcgtcaactttttcaagttcaaaccataagaa-attacaattagtcaagctcaacgaatttcaaaa |
31041908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 31033982 - 31033900
Alignment:
| Q |
7 |
tagataatactccggtaaatagaatgggtctccatttagccgattttgagacacaggactaaatgaatg-caaaataaataaatt |
90 |
Q |
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|||| ||||||||| | | | ||||||||||||||||| || |||||||||||| | ||||||||||| ||||||||||||||| |
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| T |
31033982 |
tagaaaatactccgatgacttgaatgggtctccatttatccaattttgagacac--ggctaaatgaatgtcaaaataaataaatt |
31033900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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