View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12930_low_8 (Length: 492)

Name: NF12930_low_8
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12930_low_8
NF12930_low_8
[»] chr1 (6 HSPs)
chr1 (10-475)||(14074719-14075184)
chr1 (10-310)||(14082220-14082520)
chr1 (163-327)||(14086052-14086216)
chr1 (233-279)||(14085520-14085566)
chr1 (421-475)||(14082120-14082173)
chr1 (79-140)||(14076700-14076761)
[»] scaffold0055 (6 HSPs)
scaffold0055 (369-425)||(33107-33163)
scaffold0055 (369-425)||(4050-4106)
scaffold0055 (369-425)||(42415-42471)
scaffold0055 (369-425)||(51663-51719)
scaffold0055 (369-425)||(67198-67254)
scaffold0055 (369-425)||(70118-70174)
[»] scaffold0052 (8 HSPs)
scaffold0052 (369-425)||(62902-62958)
scaffold0052 (369-425)||(4210-4266)
scaffold0052 (369-425)||(18690-18746)
scaffold0052 (369-425)||(26188-26244)
scaffold0052 (369-425)||(27962-28018)
scaffold0052 (369-425)||(48570-48626)
scaffold0052 (369-425)||(51162-51218)
scaffold0052 (369-425)||(80429-80485)
[»] scaffold0021 (1 HSPs)
scaffold0021 (369-425)||(46832-46888)


Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 10 - 475
Target Start/End: Complemental strand, 14075184 - 14074719
Alignment:
Q  10 catcatcatatgagacgtacgaggtaaggaaaagaaatccaaatccacaaacatgtgccctgttggtgattgatatgcagaattacttctcttctatggc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14075184 catcatcatatgagacgtacgaggtaaggaaaagaaatccaaatccacaaacatgtgccctgttggtgattgatatgcagaattacttctcttctatggc 14075085  T
Q  110 agccccaattcttgccaacctcaacaccactatcactctttgtagacgtgcttccatccctgtcatattcacgcgccactgccataagtctccttccgac 209  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14075084 agccctaattcttgccaacctcaacaccactatcactctttgtagacgtgcttccatccctgtcatattcacgcgccactgccataagtctccttccgac 14074985  T
Q  210 cacggtatgcttgagtagtgggtgtttgtagacctcatcatggatggctccatagaggctgagctcatgacggcattggaccgcaaaggtgagtcgaaat 309  Q
    ||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14074984 cacggtatgcttgaggagtggtggtttggagacctcatcatggatggctccatagaggctgagctcatgacggcattggaccgcaaaggtgagtcgaaat 14074885  T
Q  310 tcaaccttacaaatttcactacttctagtatattttttcatgctcaatgagtaacatctttaagagatttagattgtactaatttcaattatcaggctcg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14074884 tcaaccttacaaatttcactacttctagtatattttttcatgctcaatgagtaacatctttaagagatttagattgtactaatttcaattatcaggctcg 14074785  T
Q  410 atgagcccgatattgtactcatttcaactatcaagcttgagtaacgtgtaatttggtgtgtgatct 475  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14074784 atgagtccgatattgtactcatttcaactatcaagcttgagtaacgtgtaatttggtgtgtgatct 14074719  T

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Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 14082520 - 14082220
Alignment:
Q  10 catcatcatatgagacgtacgaggtaaggaaaagaaatccaaatccacaaacatgtgccctgttggtgattgatatgcagaattacttctcttctatggc 109  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  14082520 catcatcatatgagaagtacgaggtaaggaaaagaaacccaaatcctcaaacatgtgcccttttggtgattgatatgcagaattacttctcttccatggc 14082421  T
Q  110 agccccaattcttgccaacctcaacaccactatcactctttgtagacgtgcttccatccctgtcatattcacgcgccactgccataagtctccttccgac 209  Q
    | |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| || || ||||||||||| |||    
T  14082420 atccccaattcttgccaacctcaacaccactatcaccctctgtagacgtgcttccatccccgtcatattcacgcgccattgtcacaagtctccttctgac 14082321  T
Q  210 cacggtatgcttgagtagtgggtgtttgtagacctcatcatggatggctccatagaggctgagctcatgacggcattggaccgcaaaggtgagtcgaaat 309  Q
    || |||||||||||| |||||  ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||    
T  14082320 catggtatgcttgaggagtggtggtttggagacatcatcatggatggctccatagaggctgagctcatgacggcgttggaccgcagcggtgagtcaaaat 14082221  T
Q  310 t 310  Q
    |    
T  14082220 t 14082220  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 163 - 327
Target Start/End: Complemental strand, 14086216 - 14086052
Alignment:
Q  163 ccatccctgtcatattcacgcgccactgccataagtctccttccgaccacggtatgcttgagtagtgggtgtttgtagacctcatcatggatggctccat 262  Q
    ||||||| ||||||||||||||||||||| | ||||| ||||||||| |||||||||||||| |||||  ||||| ||||||||||||||||||||   |    
T  14086216 ccatccccgtcatattcacgcgccactgctacaagtccccttccgacaacggtatgcttgaggagtggtggtttggagacctcatcatggatggcttggt 14086117  T
Q  263 agaggctgagctcatgacggcattggaccgcaaaggtgagtcgaaattcaaccttacaaatttca 327  Q
    ||||| ||||||||||| | ||||  || |||  |||||||| ||||||||||||| ||||||||    
T  14086116 agaggttgagctcatgatgccattaaactgcatcggtgagtcaaaattcaaccttaaaaatttca 14086052  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 14085566 - 14085520
Alignment:
Q  233 gtttgtagacctcatcatggatggctccatagaggctgagctcatga 279  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  14085566 gtttggagacctcatcatggatggctccatagaggctgagctcatga 14085520  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 475
Target Start/End: Complemental strand, 14082173 - 14082120
Alignment:
Q  421 attgtactcatttcaactatcaagcttgagtaacgtgtaatttggtgtgtgatct 475  Q
    |||||||||||||||| ||||||||||||||||| ||| |||||||| |||||||    
T  14082173 attgtactcatttcaattatcaagcttgagtaac-tgtgatttggtgggtgatct 14082120  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 14076761 - 14076700
Alignment:
Q  79 ttgatatgcagaattacttctcttctatggcagccccaattcttgccaacctcaacaccact 140  Q
    ||||||| || || ||||||| ||| |||||| ||||||||||||||||| |||||||||||    
T  14076761 ttgatattcaaaactacttctattccatggcatccccaattcttgccaacttcaacaccact 14076700  T

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Target: scaffold0055 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 33107 - 33163
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||||||||||    
T  33107 ttaagggatttagattgtactcattccaattaccagactcaatgagcccgatattgt 33163  T

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Target: scaffold0055; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Complemental strand, 4106 - 4050
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||| ||||||    
T  4106 ttaagggatttagattgtactcattccaattaccagactcaatgagcccggtattgt 4050  T

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Target: scaffold0055; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 42415 - 42471
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||| ||||||    
T  42415 ttaagggatttagattgtactcattccaattaccagactcaatgagcccggtattgt 42471  T

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Target: scaffold0055; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 51663 - 51719
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||| ||||||    
T  51663 ttaagggatttagattgtactcattccaattaccagactcaatgagcccggtattgt 51719  T

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Target: scaffold0055; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 67198 - 67254
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||| ||||||    
T  67198 ttaagggatttagattgtactcattccaattaccagactcaatgagcccggtattgt 67254  T

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Target: scaffold0055; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 70118 - 70174
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||| ||||||    
T  70118 ttaagggatttagattgtactcattccaattaccagactcaatgagcccggtattgt 70174  T

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Target: scaffold0052 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 425
Target Start/End: Complemental strand, 62958 - 62902
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||||||||||    
T  62958 ttaagggatttagattgtactcattccaattaccagactcaatgagcccgatattgt 62902  T

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Target: scaffold0052; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 4210 - 4266
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||| ||||||    
T  4210 ttaagggatttagattgtactcattccaattaccagactcaatgagcccggtattgt 4266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 18690 - 18746
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||| ||||||    
T  18690 ttaagggatttagattgtactcattccaattaccagactcaatgagcccggtattgt 18746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 26188 - 26244
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||| ||||||    
T  26188 ttaagggatttagattgtactcattccaattaccagactcaatgagcccggtattgt 26244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 27962 - 28018
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||| ||||||    
T  27962 ttaagggatttagattgtactcattccaattaccagactcaatgagcccggtattgt 28018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 48570 - 48626
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||| ||||||    
T  48570 ttaagggatttagattgtactcattccaattaccagactcaatgagcccggtattgt 48626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 51162 - 51218
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||| ||||||    
T  51162 ttaagggatttagattgtactcattccaattaccagactcaatgagcccggtattgt 51218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 80429 - 80485
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||| ||||||    
T  80429 ttaagggatttagattgtactcattccaattaccagactcaatgagcccggtattgt 80485  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 46832 - 46888
Alignment:
Q  369 ttaagagatttagattgtactaatttcaattatcaggctcgatgagcccgatattgt 425  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||| ||||||||| ||||||    
T  46832 ttaagggatttagattgtactcattccaattaccagactcaatgagcccggtattgt 46888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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