View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12930_low_9 (Length: 466)
Name: NF12930_low_9
Description: NF12930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12930_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 41 - 454
Target Start/End: Complemental strand, 9994399 - 9993986
Alignment:
| Q |
41 |
gtacaatacaataacaatgtttttaaccatgaaatcatattgtaatttttcatttattttacagttgataaattctctcatgttccttttcaacaaacta |
140 |
Q |
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| T |
9994399 |
gtacaatacaataacaatgtttttaaccatgaaatcatattgtattttttcatttattttacagttgataaattctctcatgttccttttcaacaaacta |
9994300 |
T |
|
| Q |
141 |
aacaaacaacgtcaagtttgggagcatatgtgaacaaggtgcggcgtacaactttgctatgattgaaagttgtcgattattccatttatttctccatatt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
9994299 |
aacaaacaacgtcaagtttgggagcatatgtgaacaaggtgcggcgtacaactttgctatgattgaaagttgtcaattattccatttatttctccacatt |
9994200 |
T |
|
| Q |
241 |
ctgctcatttgctatgattgccatagtaatgtcattcatggattgcattctgatcactcaaatatgtttctatggttgcatatcctcactttgaacgtgc |
340 |
Q |
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| T |
9994199 |
ctgctcatttgctatgattggcatagtagtgtcattcatggattgcattctgatcactcaaatatgtttctatggttgcatatcctcactttgaacgtgc |
9994100 |
T |
|
| Q |
341 |
atctcaaagttccatacataagcgcgcttcatcaatgaccttgcgaatccgatgtaccagcaaggacaacacgacgtttccacgatcacattctgaaatc |
440 |
Q |
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| T |
9994099 |
atctcaaagttccatacataagcgcgcttcatcaatgaccttgcgaatccgatgtaccagcaaggacaacacgacgtttccacgatcacattctgaaatc |
9994000 |
T |
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| Q |
441 |
caaaacactatatt |
454 |
Q |
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| T |
9993999 |
caaaacactatatt |
9993986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 203 - 305
Target Start/End: Complemental strand, 9989131 - 9989033
Alignment:
| Q |
203 |
ttgaaagttgtcgattattccatttatttctccatattctgctcatttgctatgattgccatagtaatgtcattcatggattgcattctgatcactcaaa |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||| ||||||||||||| |
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| T |
9989131 |
ttgaaagttgtcgattattccatttatttctccatattctgctcatttgctctgattggcatagtagt----atcatggattgcatcctgatcactcaaa |
9989036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 9989250 - 9989163
Alignment:
| Q |
99 |
ttacagttgataaattctctcatgttccttttcaacaaactaaacaaacaacgtcaagtttgggagcatatgtgaacaaggtgcggcgt |
187 |
Q |
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| T |
9989250 |
ttacggttgataaattctctcattttccttttcaacaaactaaac-aacaacgtcaagtttgggagcatatgcgaacatggtgcggcgt |
9989163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 385 - 448
Target Start/End: Complemental strand, 39623581 - 39623518
Alignment:
| Q |
385 |
gaatccgatgtaccagcaaggacaacacgacgtttccacgatcacattctgaaatccaaaacac |
448 |
Q |
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| T |
39623581 |
gaatccgatgtaccagcaaggacaacacggcatttccacaatcacattctgaaatccaaaacac |
39623518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 41344852 - 41344904
Alignment:
| Q |
306 |
gtttctatggttgcatatcctcactttgaacgtgcatctcaaagttccataca |
358 |
Q |
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| T |
41344852 |
gtttgtatggttgtatatcctcactttgagcatgcttctcaaacttccataca |
41344904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 5792132 - 5792095
Alignment:
| Q |
124 |
tccttttcaacaaactaaacaaacaacgtcaagtttgg |
161 |
Q |
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|||||||| |||||||||||||||||||| |||||||| |
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| T |
5792132 |
tccttttccacaaactaaacaaacaacgttaagtttgg |
5792095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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