View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_high_10 (Length: 534)
Name: NF12931_high_10
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 250 - 521
Target Start/End: Original strand, 36354785 - 36355064
Alignment:
| Q |
250 |
ttttatgtataatttaactatgttttgctctgctttnnnnnnnntgtgagacaagaggaattaatatacatgtattgt--tgttttaatagaatttaggt |
347 |
Q |
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| T |
36354785 |
ttttatatataatttaactatgttttgctctgctttaaaaaaa-tgtgagacaagaggaattaatatacatgtattatattgttttaatagaatttaggt |
36354883 |
T |
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| Q |
348 |
gagtaaatctcaagacttgcaaatgtacttataaattat-------tatattaacaaaatattacatacggttcacatgatagccttcaacgacaaccta |
440 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36354884 |
gagtaaatctcaagaattgcaaatgtacttataaattataaattactatattaacaaaatattacatacggttcacatgatagccttcaacggcaaccta |
36354983 |
T |
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| Q |
441 |
tgagacacatgtccttgatgcgtagacatcaataataatttaaaagaacacaaataatttaatgtagttacatgtctctgc |
521 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36354984 |
tgagacacatgtccctgatacgtagacatcaataataatttaaaagaacacaaataatttaatgtaattacatgtctctgc |
36355064 |
T |
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